View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7019_low_14 (Length: 363)

Name: NF7019_low_14
Description: NF7019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7019_low_14
NF7019_low_14
[»] chr6 (59 HSPs)
chr6 (18-360)||(29825867-29826209)
chr6 (82-317)||(28325364-28325599)
chr6 (82-314)||(28242690-28242922)
chr6 (29-268)||(27718395-27718634)
chr6 (97-269)||(27229163-27229335)
chr6 (29-269)||(27611018-27611258)
chr6 (29-269)||(27724861-27725101)
chr6 (82-269)||(27604774-27604961)
chr6 (18-228)||(26937066-26937276)
chr6 (82-267)||(25481675-25481860)
chr6 (82-267)||(25579652-25579837)
chr6 (145-269)||(26802373-26802497)
chr6 (29-269)||(27698510-27698750)
chr6 (82-221)||(28234543-28234682)
chr6 (82-228)||(28297782-28297928)
chr6 (82-228)||(28514145-28514291)
chr6 (82-266)||(26142799-26142983)
chr6 (82-270)||(28181044-28181232)
chr6 (82-269)||(27338134-27338321)
chr6 (82-269)||(27398874-27399061)
chr6 (142-269)||(28781070-28781197)
chr6 (83-269)||(27593090-27593276)
chr6 (82-268)||(28185298-28185484)
chr6 (169-269)||(27531353-27531453)
chr6 (82-269)||(26655920-26656107)
chr6 (82-269)||(26761891-26762078)
chr6 (82-221)||(27665186-27665325)
chr6 (142-269)||(28786209-28786336)
chr6 (142-269)||(28792330-28792457)
chr6 (169-319)||(26949542-26949692)
chr6 (82-267)||(26048778-26048963)
chr6 (82-267)||(26069947-26070132)
chr6 (169-270)||(31284218-31284319)
chr6 (82-278)||(26342003-26342199)
chr6 (82-214)||(28226936-28227068)
chr6 (82-269)||(26622907-26623094)
chr6 (82-269)||(26728885-26729072)
chr6 (82-270)||(26884093-26884281)
chr6 (105-221)||(26893563-26893679)
chr6 (82-221)||(26959144-26959284)
chr6 (142-269)||(26646410-26646537)
chr6 (142-269)||(26752378-26752505)
chr6 (82-257)||(27678889-27679064)
chr6 (82-221)||(28149917-28150055)
chr6 (175-221)||(26811488-26811534)
chr6 (82-267)||(26055859-26056044)
chr6 (82-267)||(26075829-26076014)
chr6 (175-319)||(25071540-25071684)
chr6 (82-266)||(25538474-25538658)
chr6 (175-219)||(26975033-26975077)
chr6 (177-221)||(27214396-27214440)
chr6 (177-221)||(27234788-27234832)
chr6 (82-221)||(26635669-26635808)
chr6 (82-221)||(26741635-26741774)
chr6 (179-270)||(26861546-26861637)
chr6 (142-269)||(27677743-27677870)
chr6 (175-221)||(26617305-26617351)
chr6 (175-221)||(26723233-26723279)
chr6 (82-203)||(28139538-28139659)
[»] scaffold0038 (4 HSPs)
scaffold0038 (82-317)||(116679-116914)
scaffold0038 (82-314)||(42852-43084)
scaffold0038 (82-221)||(34704-34843)
scaffold0038 (82-214)||(27434-27566)
[»] chr4 (6 HSPs)
chr4 (76-269)||(5091017-5091210)
chr4 (26-269)||(18699400-18699643)
chr4 (82-269)||(18655533-18655720)
chr4 (82-269)||(18731560-18731747)
chr4 (26-269)||(18679567-18679810)
chr4 (97-269)||(18724156-18724328)
[»] scaffold0019 (1 HSPs)
scaffold0019 (94-278)||(58363-58547)
[»] scaffold0349 (2 HSPs)
scaffold0349 (29-269)||(14372-14611)
scaffold0349 (142-269)||(3551-3678)
[»] chr8 (3 HSPs)
chr8 (82-317)||(31903734-31903969)
chr8 (168-281)||(12588365-12588478)
chr8 (232-317)||(16373281-16373366)
[»] scaffold1254 (1 HSPs)
scaffold1254 (142-269)||(46-173)
[»] scaffold0419 (1 HSPs)
scaffold0419 (142-269)||(7456-7583)
[»] scaffold0277 (2 HSPs)
scaffold0277 (142-269)||(13761-13888)
scaffold0277 (175-269)||(4833-4927)
[»] chr2 (1 HSPs)
chr2 (175-281)||(17993846-17993952)
[»] chr5 (1 HSPs)
chr5 (142-278)||(16688933-16689069)
[»] chr1 (2 HSPs)
chr1 (82-269)||(268413-268600)
chr1 (79-184)||(28127732-28127837)


Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 59)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 29826209 - 29825867
Alignment:
Q  18 atccacatcatagaaaataggcaaaacgagacgacccttcctcttgacacactcaactatatgcacaagttcatctaagcaaaacgaagaagaagcataa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29826209 atccacatcatagaaaataggcaaaacgagacgacccttcctcttgacacactcaactatatgcacaagttcatctaagcaaaacgaagaagaagcataa 29826110  T
Q  118 ttggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29826109 ttggtagagaaaataggaatggctatcctagattcttgaattgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatga 29826010  T
Q  218 aggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaaccaaagcgagtatctgcacctgtgaaactgaggaagacatcataggtgaa 317  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29826009 aggtgcgaattttcttgtcagttagagctttgtagagattgccggtaaaaccaaagcgagtatctgcacctgtgaaactgaggaagacatcataggtgaa 29825910  T
Q  318 attacaagagaaataagaggaaggtgattgcatagctatggga 360  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29825909 attacaagagaaataagaggaaggtgattgcatagctatggga 29825867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 82 - 317
Target Start/End: Complemental strand, 28325599 - 28325364
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    ||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||   |||||||| |||| ||| ||||| | |||||| ||||| |    
T  28325599 acaagttcatccaagcaaaaggaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggccttgaaaagtgacggtgtta 28325500  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaaccaaagcgagtatc 281  Q
    ||||||| |||| |||||| ||||||||||||||||||||||||||| ||||   |   ||| ||||||||||||| |||||||||||| | ||||| ||    
T  28325499 tttcgtcacctcgttgaaggtctttgtcatcaatgaaggtacgaattctcttcctacaaagatctttgtagagatttccagtaaaaccataacgagtgtc 28325400  T
Q  282 tgcacctgtgaaactgaggaagacatcataggtgaa 317  Q
       |||| | ||||| ||||| || |||||||||||    
T  28325399 actacctctaaaactaaggaacacgtcataggtgaa 28325364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 82 - 314
Target Start/End: Complemental strand, 28242922 - 28242690
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || |||||||| |||||||||||||||||| |||| || | |||||||   |||||||| |||| ||| ||||| | |||||| ||||| |    
T  28242922 acaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgtta 28242823  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaaccaaagcgagtatc 281  Q
    ||| ||| |||| | |||| ||| |||||||||||||||| ||||||  ||| | |   ||| ||||||||||||| |||||||||||| | ||||| ||    
T  28242822 ttttgtcacctcctggaagttctctgtcatcaatgaaggtgcgaattcccttcttacaaagatctttgtagagatttccagtaaaaccataacgagtgtc 28242723  T
Q  282 tgcacctgtgaaactgaggaagacatcataggt 314  Q
       |||| | ||||| |||||||||||||||||    
T  28242722 actacctctaaaactaaggaagacatcataggt 28242690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 268
Target Start/End: Original strand, 27718395 - 27718634
Alignment:
Q  29 agaaaataggcaaaacgagacgacccttcctcttgacacactcaactatatgcacaagttcatctaagcaaaacgaagaagaagcataattggtagagaa 128  Q
    |||||| |||||||||||| ||||||||  |||||   || | || ||| || |||||||| || || |||||||||||||| ||||| ||| |||| ||    
T  27718395 agaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagttgatagaaaa 27718494  T
Q  129 aataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaatt 228  Q
     | ||||||    ||||||||||| | ||| ||||| |  ||||| ||||||||||| || ||||||||||| || |||||||||||||||||| | |||    
T  27718495 cacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggatt 27718594  T
Q  229 ttcttgtcagttagagctttgtagagattgccagtaaaac 268  Q
      ||||||||| ||||| ||||||||||| || |||||||    
T  27718595 cccttgtcagtaagagccttgtagagatttccggtaaaac 27718634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 27229335 - 27229163
Alignment:
Q  97 caaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctcttt 196  Q
    ||||| |||||||| ||||| |||| ||| || || |||||    |||| |||||| | ||| ||||| || ||||| |||||||||||||| |||||||    
T  27229335 caaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatccgagattcgtcaatggccttgacgagtgatggtgtgatttcgtctcctcttt 27229236  T
Q  197 gaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    |||| || |||||||||||||||||| | |||  ||||||||| ||||| |||||||||||||| ||||||||    
T  27229235 gaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccggtaaaacc 27229163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 27611018 - 27611258
Alignment:
Q  29 agaaaataggcaaaacgagacgacccttcctcttgacacactcaactatatgcacaagttcatctaagcaaaacgaagaagaagcataattggtagagaa 128  Q
    |||||| |||||||||||| ||||||||  |||||   || | || ||| || |||||||| || || |||||||||||||| ||||| ||| |||| ||    
T  27611018 agaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaagaggcatagttgatagaaaa 27611117  T
Q  129 aataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaatt 228  Q
     | ||||||    ||||||||||| | ||| ||||| |  ||||| ||||||||||| || |||||| |||| || |||||||||||||||||| | |||    
T  27611118 cacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctcttggaagatcattgtcatcaatgaaggtatggatt 27611217  T
Q  229 ttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
      ||||||||| ||||| ||||||||||| || ||||||||    
T  27611218 cccttgtcagtaagagccttgtagagatttccggtaaaacc 27611258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 27724861 - 27725101
Alignment:
Q  29 agaaaataggcaaaacgagacgacccttcctcttgacacactcaactatatgcacaagttcatctaagcaaaacgaagaagaagcataattggtagagaa 128  Q
    |||||| |||||||||||| ||||||||  |||||   || | || ||| || |||||||| || || |||||||||||| | ||||| ||| |||| ||    
T  27724861 agaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaataggcatagttgatagaaaa 27724960  T
Q  129 aataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaatt 228  Q
     | ||||||    ||||||||||| | ||| ||||| |  ||||| ||||||||||| || ||||||||||| || |||||||||||||||||| | |||    
T  27724961 cacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggatt 27725060  T
Q  229 ttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
      ||||||||| ||||| ||||||||||| || ||||||||    
T  27725061 cccttgtcagtaagagccttgtagagatttccggtaaaacc 27725101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 27604774 - 27604961
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    ||||||||||| || ||||| |||||||| ||||| ||| |||| || | ||||||    ||||| ||||| | ||| ||||| | |||||  |||||||    
T  27604774 acaagttcatccaaacaaaaggaagaagaggcatatttgatagaaaacacaggaataaaaatcctggattcatcaatggccttgagaagtgctggtgtga 27604873  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    |||| || |||||| |||| || || ||||||||||||||| |||||  ||||||||| ||||| |||||||||||||| ||||||||    
T  27604874 tttcatctcctcttcgaagatcattttcatcaatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaacc 27604961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 26937276 - 26937066
Alignment:
Q  18 atccacatcatagaaaataggcaaaacgagacgacccttcctcttgacacactcaactatatgcacaagttcatctaagcaaaacgaagaagaagcataa 117  Q
    |||||| |||||||||||||||||||  ||| |||| ||  ||||||  || ||||| || || |||||||| || || ||||| |||||||  |||||     
T  26937276 atccacttcatagaaaataggcaaaattagatgaccttttgtcttgaagcagtcaacgatgtggacaagttcgtccaaacaaaatgaagaagtggcatag 26937177  T
Q  118 ttggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatga 217  Q
    ||| ||||||| | ||| ||||| ||||  || |||| ||| ||||| |||||||| ||||||||||| || ||||  || ||||| |||||||||||||    
T  26937176 ttgatagagaatacaggtatggcaatcccggaatcttcaattgccttgacaagtgatggtgtgatttcttctcctccatggagctccttgtcatcaatga 26937077  T
Q  218 aggtacgaatt 228  Q
    |||| ||||||    
T  26937076 aggtgcgaatt 26937066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 82 - 267
Target Start/End: Complemental strand, 25481860 - 25481675
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| |||| ||| || || |||||    ||||||||||||| ||| ||||| |||||||| |||||||    
T  25481860 acaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaatacaaatcctagattcttcaatggccttgacaagtgatggtgtga 25481761  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaa 267  Q
    |||| || ||||||||||| || || ||||||||||| |||||||||  |||||||   ||||| || |||||||| || ||||||    
T  25481760 tttcatctcctctttgaagatcattttcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggtaaaa 25481675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 82 - 267
Target Start/End: Complemental strand, 25579837 - 25579652
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| |||| ||| || || |||||    ||||||||||||| ||| ||||| |||||||| |||||||    
T  25579837 acaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtga 25579738  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaa 267  Q
    |||| || ||||||||||| || || ||||||| |||||||||||||  |||||||   ||||| || |||||||| || ||||||    
T  25579737 tttcatctcctctttgaagatcattatcatcaaagaaggtacgaattcccttgtcaacaagagccttatagagattaccggtaaaa 25579652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 269
Target Start/End: Complemental strand, 26802497 - 26802373
Alignment:
Q  145 ctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagag 244  Q
    |||||||||| ||| ||||| |  ||||| ||||||||||| || ||||||||||| || |||||||||||||||||| | |||  ||||||| | ||||    
T  26802497 ctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcaataagag 26802398  T
Q  245 ctttgtagagattgccagtaaaacc 269  Q
    | |||||||||||||| ||||||||    
T  26802397 ccttgtagagattgcccgtaaaacc 26802373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 27698510 - 27698750
Alignment:
Q  29 agaaaataggcaaaacgagacgacccttcctcttgacacactcaactatatgcacaagttcatctaagcaaaacgaagaagaagcataattggtagagaa 128  Q
    |||||| |||||||||||| ||||||||  ||| |   || | || ||| || |||||||| || || ||||| |||||||| ||||| |||  ||| ||    
T  27698510 agaaaacaggcaaaacgaggcgaccctttgtctcgtagcagtgaattatgtggacaagttcgtccaaacaaaatgaagaagatgcatagttgagagaaaa 27698609  T
Q  129 aataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaatt 228  Q
     | ||||||    ||||||||||| | ||| ||||| |  ||||| ||||||||||| || ||||||||||| || |||||||||||||||||| | |||    
T  27698610 cacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggatt 27698709  T
Q  229 ttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
      ||||||||| ||||| ||||||||||| || ||||||||    
T  27698710 cccttgtcagtaagagccttgtagagatttccggtaaaacc 27698750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 28234682 - 28234543
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || |||||||| |||||||||||||||||| |||| || | |||||||   |||||||| |||| ||| ||||| | |||||| ||||| |    
T  28234682 acaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgtta 28234583  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggt 221  Q
    |||| || |||| |||||||||  ||||||||||||||||    
T  28234582 tttcatctcctccttgaagctccctgtcatcaatgaaggt 28234543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 28297782 - 28297928
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || |||||||| ||||||||||||||||||||||| || | |||||||   |||||||  |||| |||   ||| | |||||| ||||| |    
T  28297782 acaagttcgtccaagcaaaatgaagaagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatgtgcttgaaaagtgatggtgtta 28297881  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaatt 228  Q
    ||||||| |||| || ||||||| |||||||||||||||| ||||||    
T  28297882 tttcgtcacctcctttaagctctctgtcatcaatgaaggtgcgaatt 28297928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 28514291 - 28514145
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || |||||||| ||||||||||||||||||||||| || | |||||||   |||||||  |||| |||   ||| | |||||| ||||| |    
T  28514291 acaagttcgtccaagcaaaatgaagaagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatgtgcttgaaaagtgatggtgtta 28514192  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaatt 228  Q
    ||||||| |||| || ||||||| |||||||||||||||| ||||||    
T  28514191 tttcgtcacctcctttaagctctctgtcatcaatgaaggtgcgaatt 28514145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 266
Target Start/End: Complemental strand, 26142983 - 26142799
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| |||| ||| || || |||||    ||||||||||||| ||| ||||| |||||||| |||||||    
T  26142983 acaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtga 26142884  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaa 266  Q
    |||| || ||||||| ||| || || ||||||||||| |||||||||  |||||||   ||||| || |||||||| || |||||    
T  26142883 tttcatctcctctttcaagatcattatcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggtaaa 26142799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 270
Target Start/End: Complemental strand, 28181232 - 28181044
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || |||||||| |||||||||||||||||| |||| || |  ||||||   |||||||| |||| ||| ||||| | |||||| | ||| |    
T  28181232 acaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgaaaagtgatgatgtta 28181133  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacca 270  Q
    |||| || |||| |||||||||| ||||||| |||||||| || |||  |||||||   |||||| | | |||||| ||||||||||||    
T  28181132 tttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctattgagatttccagtaaaacca 28181044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 27338134 - 27338321
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || |||||||| |||||||| ||||| || | ||| || || |||||    |||||||| |||| ||| ||||| |||||||| ||||||     
T  27338134 acaagttcgtccaagcaaaatgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgc 27338233  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    |||| || ||||||| ||| || |||||||||||||||||    |||  ||||||| | ||||| |||||||||||||| ||||||||    
T  27338234 tttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaacc 27338321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 27398874 - 27399061
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || |||||||| |||||||| ||||| || | ||| || || |||||    |||||||| |||| ||| ||||| |||||||| ||||||     
T  27398874 acaagttcgtccaagcaaaatgaagaagatgcatagtttgcagaaaatatgggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgc 27398973  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    |||| || ||||||| ||| || |||||||||||||||||    |||  ||||||| | ||||| |||||||||||||| ||||||||    
T  27398974 tttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaacc 27399061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 269
Target Start/End: Complemental strand, 28781197 - 28781070
Alignment:
Q  142 atcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagtta 241  Q
    |||||||||||||  || ||||| |  ||||| ||||||||||| || ||||||||||| || |||||||||||||||||    |||  ||||||||| |    
T  28781197 atcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaa 28781098  T
Q  242 gagctttgtagagattgccagtaaaacc 269  Q
    |||| |||||||||||||| ||||||||    
T  28781097 gagccttgtagagattgccggtaaaacc 28781070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 83 - 269
Target Start/End: Original strand, 27593090 - 27593276
Alignment:
Q  83 caagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgat 182  Q
    ||||||| || || |||||||||||||| ||||| ||| |||| || | ||||||    |||||||| |||| ||| ||||| | |||||| ||||||||    
T  27593090 caagttcgtccaaacaaaacgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgat 27593189  T
Q  183 ttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    ||| |  |||||||||||  | |||||||||||||||||    |||  ||||||||| ||||| |||||||||||||| || |||||    
T  27593190 ttcatttcctctttgaagaccattgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattgccggtgaaacc 27593276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 82 - 268
Target Start/End: Complemental strand, 28185484 - 28185298
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || |||||||| |||||||||||||||||| |||| || |  ||||||   |||||||| |||| ||| ||||| | |||||| | ||| |    
T  28185484 acaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgaaaagtgatgatgtta 28185385  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaac 268  Q
    |||| || |||| |||||||||| ||||||| |||||||| || |||  |||||||   |||||| | | |||||| ||||||||||    
T  28185384 tttcttcacctccttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctattgagatttccagtaaaac 28185298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 269
Target Start/End: Original strand, 27531353 - 27531453
Alignment:
Q  169 agtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaac 268  Q
    ||||| ||||||||||| || ||||||||||| || ||||||||||||||||||   |||  ||||||||| ||||| ||||||||||| || |||||||    
T  27531353 agtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatagattcccttgtcagtaagagccttgtagagatttccggtaaaac 27531452  T
Q  269 c 269  Q
    |    
T  27531453 c 27531453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 269
Target Start/End: Complemental strand, 26656107 - 26655920
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| |||| ||| || || |||||    ||||| ||||||| ||| ||||| || ||||| |||||||    
T  26656107 acaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggccttaacgagtgatggtgtga 26656008  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    |||| || |||||  |||| || |||||||||||||| ||| | |||  ||| ||| | ||||| |||||||||||||| ||||||||    
T  26656007 tttcatctcctctgagaagatcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaacc 26655920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 269
Target Start/End: Complemental strand, 26762078 - 26761891
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| |||| ||| || || |||||    ||||| ||||||| ||| ||||| || ||||| |||||||    
T  26762078 acaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctggattcttcaatggccttaacgagtgatggtgtga 26761979  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    |||| || |||||  |||| || |||||||||||||| ||| | |||  ||| ||| | ||||| |||||||||||||| ||||||||    
T  26761978 tttcatctcctctgagaagatcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaacc 26761891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 27665186 - 27665325
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||||||||| ||||| ||||||| |||||| ||  ||||||| |||  |||||| ||||| ||||||| |||   ||||   ||||| |||||||    
T  27665186 acaagttcatctaaacaaaatgaagaagtagcatagttcttagagaatataataatggcaatcctcgattcttcaatgctcttccggagtgaaggtgtga 27665285  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggt 221  Q
    ||||||| ||  || ||||||| |||||||||||||||||    
T  27665286 tttcgtcaccagttggaagctccttgtcatcaatgaaggt 27665325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 269
Target Start/End: Complemental strand, 28786336 - 28786209
Alignment:
Q  142 atcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagtta 241  Q
    |||||||||||||  || ||||| |  ||||| ||||||||||| || ||||||||||| || |||||||||||||||||    |||  ||||||||| |    
T  28786336 atcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaa 28786237  T
Q  242 gagctttgtagagattgccagtaaaacc 269  Q
    |||| ||||||||||| || ||||||||    
T  28786236 gagccttgtagagatttccggtaaaacc 28786209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 269
Target Start/End: Complemental strand, 28792457 - 28792330
Alignment:
Q  142 atcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagtta 241  Q
    |||||||||||||  || ||||| |  ||||| ||||||||||| || ||||||||||| || |||||||||||||||||    |||  ||||||||| |    
T  28792457 atcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaa 28792358  T
Q  242 gagctttgtagagattgccagtaaaacc 269  Q
    |||| ||||||||||| || ||||||||    
T  28792357 gagccttgtagagatttccggtaaaacc 28792330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 26949692 - 26949542
Alignment:
Q  169 agtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaac 268  Q
    ||||| |||||||||||||| ||| | |||||||| || |||||||||||||| || |||  ||||||||  |||||||| |||||||| || || ||||    
T  26949692 agtgaaggtgtgatttcgtcacctttctgaagctccttatcatcaatgaaggttcggattcccttgtcagagagagctttatagagattaccggtgaaac 26949593  T
Q  269 caaagcgagtatctgcacctgtgaaactgaggaagacatcataggtgaaat 319  Q
    | || ||||| || | |||| ||||||| | ||| |||||| || ||||||    
T  26949592 cgaatcgagtgtcggtacctctgaaactaatgaacacatcaaagttgaaat 26949542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 82 - 267
Target Start/End: Complemental strand, 26048963 - 26048778
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| |||| ||| || || |||||    |||||||||||||  || ||||| ||||||  ||||||||    
T  26048963 acaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagtttgggtgtga 26048864  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaa 267  Q
    |||| || ||||||| ||| || || ||||||||||| |||| ||||  ||||||| | ||||| || |||||||| || ||||||    
T  26048863 tttcatctcctctttcaagatcattatcatcaatgaaagtacaaattcccttgtcaatgagagccttatagagattaccggtaaaa 26048778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 82 - 267
Target Start/End: Complemental strand, 26070132 - 26069947
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| |||| ||| || || |||||    |||||||||||||  || ||||| ||||||  ||||||||    
T  26070132 acaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcctagattcttccatggccttgacaagtttgggtgtga 26070033  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaa 267  Q
    |||| || ||||||| ||| || || ||||||||||| |||| ||||  ||||||| | ||||| || |||||||| || ||||||    
T  26070032 tttcatctcctctttcaagatcattatcatcaatgaaagtacaaattcccttgtcaatgagagccttatagagattaccggtaaaa 26069947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 31284319 - 31284218
Alignment:
Q  169 agtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaac 268  Q
    ||||| ||||||||||| |||||||||||||| ||  | ||||||||||||||  | |||  ||||||||| ||||| |||||||||||||| || ||||    
T  31284319 agtgatggtgtgatttcatcccctctttgaagttcactatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagattgccggtgaaac 31284220  T
Q  269 ca 270  Q
    ||    
T  31284219 ca 31284218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 278
Target Start/End: Original strand, 26342003 - 26342199
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || |||||||||||||||||||| ||| | |||||||| ||||||   ||||| || |||| ||| || || ||||||||  ||||||    
T  26342003 acaagttcgtccaaacaaaacgaagaagaagcatagttgattgagaaaattggaatgaaaatcctggactcttcaatggctttgacaagtgattgtgtga 26342102  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaaccaaagcgagt 278  Q
    ||| ||| ||||  ||||||||  | |||||||||||||| || | |     ||||  ||||||| | |||| |||||||||||||||| |||||||    
T  26342103 ttttgtcacctccatgaagctccctatcatcaatgaaggtgcggactccaccgtcacatagagctctatagatattgccagtaaaaccatagcgagt 26342199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 28227068 - 28226936
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || |||||||| |||||||||||||||||| |||| || | |||||||   ||||||||||||| |||  |||| | |||||| | ||| |    
T  28227068 acaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgtta 28226969  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaa 214  Q
    |||| || |||| |||||||||| | |||||||    
T  28226968 tttcatcacctccttgaagctctctatcatcaa 28226936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 269
Target Start/End: Complemental strand, 26623094 - 26622907
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    ||||||||||| || ||||| |||||| | ||||| |||| ||| || | ||||||    |||||||| ||||  || || ||  ||||||| ||| |||    
T  26623094 acaagttcatccaaacaaaatgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttga 26622995  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    ||||||||||||||||||| ||    ||||||||||||||  | |||  ||||||||| ||||| ||||||||||| ||||| |||||    
T  26622994 tttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaacc 26622907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 269
Target Start/End: Complemental strand, 26729072 - 26728885
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    ||||||||||| || ||||| |||||| | ||||| |||| ||| || | ||||||    |||||||| ||||  || || ||  ||||||| ||| |||    
T  26729072 acaagttcatccaaacaaaatgaagaatatgcatagttgggagaaaacacaggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttga 26728973  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    ||||||||||||||||||| ||    ||||||||||||||  | |||  ||||||||| ||||| ||||||||||| ||||| |||||    
T  26728972 tttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaacc 26728885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 270
Target Start/End: Complemental strand, 26884281 - 26884093
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| |||||||| || || |||||    || |||||||||| ||| ||||| |  ||||| |||||||    
T  26884281 acaagttcgtccaaacaaaatgaagaagatgcatagttggtagaaaatattggaataaaaattctagattcttcaatggccttgatgagtgatggtgtga 26884182  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacca 270  Q
    |||||   |||||| |||| |  || ||||||||||||||  | |||  ||||| ||| ||||| ||||||||||| ||||| ||||||    
T  26884181 tttcgcttcctcttggaagatgattatcatcaatgaaggtgtggattcccttgttagtaagagccttgtagagatttccagtgaaacca 26884093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 26893563 - 26893679
Alignment:
Q  105 agaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctct 204  Q
    |||||||||||| ||| ||||||  |  ||||||  |||| |||| |||| ||| ||||| | |||||| |||| ||||||||| ||||| |||||||||    
T  26893563 agaagaagcatagttgatagagaggactggaatgtatatcatagactcttcaattgccttgataagtgatggtgagatttcgtcacctctatgaagctct 26893662  T
Q  205 ttgtcatcaatgaaggt 221  Q
     | ||||||||||||||    
T  26893663 gtatcatcaatgaaggt 26893679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 26959284 - 26959144
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaat-cgccttcacaagtgagggtgtg 180  Q
    ||||||||||| ||  ||||||||||||||||||| |   |||||||||    |||||| ||||| || |||| ||| | | || | ||| || ||||||    
T  26959284 acaagttcatccaaataaaacgaagaagaagcatattccttagagaaaacgataatggcaatcctcgagtcttcaatgctctttgagaagcgaaggtgtg 26959185  T
Q  181 atttcgtcccctctttgaagctctttgtcatcaatgaaggt 221  Q
    ||||| |||||| ||| ||||||||||||||||||||||||    
T  26959184 atttcatccccttttttaagctctttgtcatcaatgaaggt 26959144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 269
Target Start/End: Complemental strand, 26646537 - 26646410
Alignment:
Q  142 atcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagtta 241  Q
    ||||||||||||| ||| ||||| |  ||||| ||||||||||| || ||||| | ||| ||    ||||||||||||||  |||||  ||||||||| |    
T  26646537 atcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcacaatcatcaatgaaggtgtgaattcccttgtcagtaa 26646438  T
Q  242 gagctttgtagagattgccagtaaaacc 269  Q
    |||| ||||||||||  |||||||||||    
T  26646437 gagccttgtagagatgtccagtaaaacc 26646410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 269
Target Start/End: Complemental strand, 26752505 - 26752378
Alignment:
Q  142 atcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagtta 241  Q
    ||||||||||||| ||| ||||| |  ||||| ||||||||||| || ||||| | ||| ||    ||||||||||||||  |||||  ||||||||| |    
T  26752505 atcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcacaatcatcaatgaaggtgtgaattcccttgtcagtaa 26752406  T
Q  242 gagctttgtagagattgccagtaaaacc 269  Q
    |||| ||||||||||  |||||||||||    
T  26752405 gagccttgtagagatgtccagtaaaacc 26752378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 257
Target Start/End: Complemental strand, 27679064 - 27678889
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| ||| |||| || | ||||||    |||||||| |||| ||| ||||| | |||||| |||||||    
T  27679064 acaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtga 27678965  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagatt 257  Q
    |||| || |||||||||||  | || | ||||||||||||    |||  ||||||||| ||||| |||||||||||    
T  27678964 tttcatctcctctttgaagaccattcttatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagatt 27678889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 28150055 - 28149917
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||||| ||| ||| ||||||| || ||||||   ||||| || |||| ||| ||||| | | |||| |||||||    
T  28150055 acaagttcgtccaaacaaaatgaagaagaagtatagttgatagagaagattggaatgaaaatcctggactcttcaatggccttgaga-gtgatggtgtga 28149957  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggt 221  Q
    |||||||||||| || ||||||  | ||||||||||||||    
T  28149956 tttcgtcccctcgttaaagctccgtatcatcaatgaaggt 28149917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 26811534 - 26811488
Alignment:
Q  175 ggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggt 221  Q
    |||||||||||||| ||||| |||||||| |||||||||||||||||    
T  26811534 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 26811488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 267
Target Start/End: Complemental strand, 26056044 - 26055859
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| |||| ||| || || |||||    |||| ||||||||  || ||||| |||||||| | |||||    
T  26056044 acaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtga 26055945  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaa 267  Q
    |||| || ||||||||||| || || ||||||||||| |||  ||||  |||||||   ||||| || |||||||| || ||||||    
T  26055944 tttcatctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaa 26055859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 267
Target Start/End: Complemental strand, 26076014 - 26075829
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| |||| ||| || || |||||    |||| ||||||||  || ||||| |||||||| | |||||    
T  26076014 acaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaatcccagattcttcgatggccttgacaagtgatgatgtga 26075915  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaa 267  Q
    |||| || ||||||||||| || || ||||||||||| |||  ||||  |||||||   ||||| || |||||||| || ||||||    
T  26075914 tttcatctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaa 26075829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 319
Target Start/End: Complemental strand, 25071684 - 25071540
Alignment:
Q  175 ggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaaccaaagc 274  Q
    |||||||||||||| ||||| | |||||||||||||||||| |||||  | |||   |||||||  |||||||| || ||||| || |||||||| || |    
T  25071684 ggtgtgatttcgtcacctctcttaagctctttgtcatcaataaaggtgtggattcctttgtcagaaagagctttataaagattaccggtaaaaccgaatc 25071585  T
Q  275 gagtatctgcacctgtgaaactgaggaagacatcataggtgaaat 319  Q
    |||| || | |||  ||||||| | ||| || |||||| ||||||    
T  25071584 gagtgtcggtacccctgaaactaatgaacacgtcatagatgaaat 25071540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 266
Target Start/End: Complemental strand, 25538658 - 25538474
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| |||| ||| || || |||||    || ||||||||||  || ||||| |||||||| |||||||    
T  25538658 acaagttcgtccaaacaaaatgaagaagatgcatagttggcagaaaatatgggaataaaaattctagattcttcgatggccttgacaagtgatggtgtga 25538559  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaa 266  Q
    |||| || ||||||| ||| || || ||||| ||||| |||| ||||  |||||||   ||||| || |||||||| || |||||    
T  25538558 tttcatctcctctttcaagatcattatcatctatgaaagtactaattcccttgtcaacaagagccttatagagattaccggtaaa 25538474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 26975077 - 26975033
Alignment:
Q  175 ggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaag 219  Q
    |||||||||||||||||| ||| |||||| |||||||||||||||    
T  26975077 ggtgtgatttcgtccccttttttaagctccttgtcatcaatgaag 26975033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 27214440 - 27214396
Alignment:
Q  177 tgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggt 221  Q
    |||||||||||| ||||| |||||||| |||||||||||||||||    
T  27214440 tgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 27214396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 27234788 - 27234832
Alignment:
Q  177 tgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggt 221  Q
    |||||||||||| ||||| |||||||| |||||||||||||||||    
T  27234788 tgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggt 27234832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 26635808 - 26635669
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    ||||||||||| || |||||| ||||||||||||| |   |||||||||    |||||| ||||| || |||| |||   ||| |  || || |||||||    
T  26635808 acaagttcatccaaacaaaacaaagaagaagcatattccttagagaaaacgataatggcaatcctcgactcttcaatgctcttgaggagcgaaggtgtga 26635709  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggt 221  Q
    |||| |||||| ||| |||||| |||||||||||||||||    
T  26635708 tttcatccccttttttaagctccttgtcatcaatgaaggt 26635669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 26741774 - 26741635
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    ||||||||||| || |||||| ||||||||||||| |   |||||||||    |||||| ||||| || |||| |||   ||| |  || || |||||||    
T  26741774 acaagttcatccaaacaaaacaaagaagaagcatattccttagagaaaacgataatggcaatcctcgactcttcaatgctcttgaggagcgaaggtgtga 26741675  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggt 221  Q
    |||| |||||| ||| |||||| |||||||||||||||||    
T  26741674 tttcatccccttttttaagctccttgtcatcaatgaaggt 26741635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 26861637 - 26861546
Alignment:
Q  179 tgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacca 270  Q
    ||||||| |||||||||||||| ||    ||||| ||||||||  |||||  ||||||||| ||||| ||||||||||| || |||||||||    
T  26861637 tgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattaccggtaaaacca 26861546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 27677743 - 27677870
Alignment:
Q  142 atcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagtta 241  Q
    |||||||| |||| ||| ||||| | |||||| ||||||||||| |||||||||||||| || |  |  |||||||||||  | |||  |||||||   |    
T  27677743 atcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccctctttgaagttcatgattgtcaatgaaggtgtggattcccttgtcatcaa 27677842  T
Q  242 gagctttgtagagattgccagtaaaacc 269  Q
    |||| |||||||||||||| || |||||    
T  27677843 gagccttgtagagattgccggtgaaacc 27677870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 26617351 - 26617305
Alignment:
Q  175 ggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggt 221  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||    
T  26617351 ggtgtgatttcatcacctctctgaagctccttgtcatcaatgaaggt 26617305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 26723279 - 26723233
Alignment:
Q  175 ggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggt 221  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||    
T  26723279 ggtgtgatttcatcacctctctgaagctccttgtcatcaatgaaggt 26723233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 28139659 - 28139538
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || ||||||||||||||||| ||||| ||| | || || | ||| |||   ||||||||||||| ||| || || || ||||| ||||  |    
T  28139659 acaagttcgtccaagcaaaacgaagaagaggcatagttgatggaaaacacagggatgaaaatcctagattcttcaatggcttttacgagtgacggtgata 28139560  T
Q  182 tttcgtcccctctttgaagctc 203  Q
    ||||||| |||| |||||||||    
T  28139559 tttcgtcacctccttgaagctc 28139538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 82 - 317
Target Start/End: Complemental strand, 116914 - 116679
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    ||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||   |||||||| |||| ||| ||||| | |||||| ||||| |    
T  116914 acaagttcatccaagcaaaaggaagaagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggccttgaaaagtgacggtgtta 116815  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaaccaaagcgagtatc 281  Q
    ||||||| |||| |||||| ||||||||||||||||||||||||||| ||||   |   ||| ||||||||||||| |||||||||||| | ||||| ||    
T  116814 tttcgtcacctcgttgaaggtctttgtcatcaatgaaggtacgaattctcttcctacaaagatctttgtagagatttccagtaaaaccataacgagtgtc 116715  T
Q  282 tgcacctgtgaaactgaggaagacatcataggtgaa 317  Q
       |||| | ||||| ||||| || |||||||||||    
T  116714 actacctctaaaactaaggaacacgtcataggtgaa 116679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 82 - 314
Target Start/End: Complemental strand, 43084 - 42852
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || |||||||| |||||||||||||||||| |||| || | |||||||   |||||||| |||| ||| ||||| | |||||| ||||| |    
T  43084 acaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgtta 42985  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaaccaaagcgagtatc 281  Q
    ||| ||| |||| | |||| ||| |||||||||||||||| ||||||  ||| | |   ||| ||||||||||||| |||||||||||| | ||||| ||    
T  42984 ttttgtcacctcctggaagttctctgtcatcaatgaaggtgcgaattcccttcttacaaagatctttgtagagatttccagtaaaaccataacgagtgtc 42885  T
Q  282 tgcacctgtgaaactgaggaagacatcataggt 314  Q
       |||| | ||||| |||||||||||||||||    
T  42884 actacctctaaaactaaggaagacatcataggt 42852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 34843 - 34704
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || |||||||| |||||||||||||||||| |||| || | |||||||   |||||||| |||| ||| ||||| | |||||| ||||| |    
T  34843 acaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgtta 34744  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggt 221  Q
    |||| || |||| |||||||||  ||||||||||||||||    
T  34743 tttcatctcctccttgaagctccctgtcatcaatgaaggt 34704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 27566 - 27434
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || |||||||| |||||||||||||||||| |||| || | |||||||   ||||||||||||| |||  |||| | |||||| | ||| |    
T  27566 acaagttcgtccaagcaaaatgaagaagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgtta 27467  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaa 214  Q
    |||| || |||| |||||||||| | |||||||    
T  27466 tttcatcacctccttgaagctctctatcatcaa 27434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 76 - 269
Target Start/End: Original strand, 5091017 - 5091210
Alignment:
Q  76 atatgcacaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagg 175  Q
    ||||| |||||||||||||| |||||||||||||||||||| | | |||||||||    |||| | ||| ||||||||||||| ||||| | |||||| |    
T  5091017 atatggacaagttcatctaaacaaaacgaagaagaagcatagtggttagagaaaacgataatgacaatcttagattcttgaatggccttgagaagtgacg 5091116  T
Q  176 gtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    |||| |||| ||| ||||  ||||||||| ||||||||||||||||  |||||  |||| ||  ||||||||  |||||||| |||||||||||    
T  5091117 gtgttatttggtctcctcgctgaagctctctgtcatcaatgaaggtgtgaattcccttgacacgtagagcttcatagagatttccagtaaaacc 5091210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 269
Target Start/End: Original strand, 18699400 - 18699643
Alignment:
Q  26 catagaaaataggcaaaacgagacgacccttcctcttgacacactcaactatatgcacaagttcatctaagcaaaacgaagaagaagcataattggtaga 125  Q
    ||||||||| |||||||||||||||||| ||  |||||   || | ||  || || |||||||| || || ||||| |||||||| ||||| ||| ||||    
T  18699400 catagaaaacaggcaaaacgagacgaccttttgtcttgtagcagtgaatgatgtgaacaagttcgtccaaacaaaatgaagaagaggcatagttgataga 18699499  T
Q  126 gaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacga 225  Q
     || | |||||||   |||||||| |||| ||| || ||  | ||||| ||| ||||||| ||||| ||||| || ||   |||||||||||||||  |     
T  18699500 aaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatccccactttgcaggtcacggtcatcaatgaaggtgtgg 18699599  T
Q  226 attttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    |||  ||||||||| |||||||||||||||| ||||||||||||    
T  18699600 attcccttgtcagtaagagctttgtagagatggccagtaaaacc 18699643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 18655533 - 18655720
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| ||| |||| || | ||||||    |||||||| |||||||| || ||  | ||||| ||| |||    
T  18655533 acaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaagatcctagactcttgaatggcattgtcgagtgatggtttga 18655632  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    |||| ||||| ||||| |||||   |||||||||||||||  | |||  ||||||||| ||||||||||||||||  |||||||||||    
T  18655633 tttcatccccactttgcagctcacggtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatgcccagtaaaacc 18655720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 18731560 - 18731747
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| ||| |||| || | |||||||   |||||||| |||| ||| || ||  | ||||| ||| |||    
T  18731560 acaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttga 18731659  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    |||| ||||||||||| || ||   |||||||||||||||  | |||  ||||||||| |||||| ||||||||| ||||||||||||    
T  18731660 tttcatcccctctttgcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagctctgtagagatggccagtaaaacc 18731747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 269
Target Start/End: Original strand, 18679567 - 18679810
Alignment:
Q  26 catagaaaataggcaaaacgagacgacccttcctcttgacacactcaactatatgcacaagttcatctaagcaaaacgaagaagaagcataattggtaga 125  Q
    ||||||||| ||||||||| |||||||||||  |||||   || | ||  || || |||||||| || || ||||| |||||||| ||||| ||| ||||    
T  18679567 catagaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaatgaagaagaggcatagttgataga 18679666  T
Q  126 gaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacga 225  Q
     || | |||||||   |||||||| |||| ||| || ||  | ||||| ||| ||||||| ||||||||||| || ||   |||||||||||||||  |     
T  18679667 aaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcaggtcacggtcatcaatgaaggtgtgg 18679766  T
Q  226 attttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    |||   |||||||| ||||| ||||||||||  |||||||||||    
T  18679767 attcctttgtcagtaagagccttgtagagatgaccagtaaaacc 18679810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 18724156 - 18724328
Alignment:
Q  97 caaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctcttt 196  Q
    ||||| |||||||| ||||| ||| |||| || | |||||||   |||||||| |||| ||| || ||  | ||||| ||| ||||||| ||||||||||    
T  18724156 caaaatgaagaagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctcttt 18724255  T
Q  197 gaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    | || ||   |||||||||||||||  | |||  ||||||||| ||||| ||||||||||  |||||||||||    
T  18724256 gcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaacc 18724328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 94 - 278
Target Start/End: Original strand, 58363 - 58547
Alignment:
Q  94 aagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctc 193  Q
    |||||||| |||||||||||||| ||| |||| || |  ||||||   |||||||| |||| ||| ||||| | |||||| ||||| |||||||| ||||    
T  58363 aagcaaaatgaagaagaagcatagttgatagacaagacgggaatgaaaatcctagactctttaatggccttgaaaagtgatggtgttatttcgtcacctc 58462  T
Q  194 tttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaaccaaagcgagt 278  Q
     |||||||||| ||||||| |||||||| || |||  |||||||   |||||| |||||||||| |||||||||||| |||||||    
T  58463 cttgaagctctctgtcatccatgaaggttcggattcccttgtcacaaagagctctgtagagatttccagtaaaaccatagcgagt 58547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 14372 - 14611
Alignment:
Q  29 agaaaataggcaaaacgagacgacccttcctcttgacacactcaactatatgcacaagttcatctaagcaaaacgaagaagaagcataattggtagagaa 128  Q
    |||||| |||||||||||| ||||||||  |||||   || | || ||| || |||||||| || || |||||||||||| | ||||| ||| |||| ||    
T  14372 agaaaacaggcaaaacgaggcgaccctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacgaagaa-aggcatagttgatagaaaa 14470  T
Q  129 aataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaatt 228  Q
     | ||||||    ||||||||||| | ||| ||||| |  ||||| ||||||||||| || ||||||||||| || |||||||||||||||||| | |||    
T  14471 cacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggatt 14570  T
Q  229 ttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
      ||||||||| ||||| ||||||||||| || ||||||||    
T  14571 cccttgtcagtaagagccttgtagagatttccggtaaaacc 14611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 3551 - 3678
Alignment:
Q  142 atcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagtta 241  Q
    ||||||||||| | ||| ||||| |  ||||| ||||||||||| || ||||||||||| || |||||||||||||||||| | |||  ||||||||| |    
T  3551 atcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaa 3650  T
Q  242 gagctttgtagagattgccagtaaaacc 269  Q
    |||| ||||||||||| || ||||||||    
T  3651 gagccttgtagagatttccggtaaaacc 3678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 317
Target Start/End: Complemental strand, 31903969 - 31903734
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||||| ||||||||| |||||||||||||| ||  ||||||  | |  |||||| |||||||| |||| ||| ||||  | |||||| |||||||    
T  31903969 acaagttcatgtaagcaaaatgaagaagaagcatagtttttagagagcacaataatggcaatcctagactcttcaattgcctctaaaagtgatggtgtga 31903870  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaaccaaagcgagtatc 281  Q
    |||| |  ||||||||||| ||||  || ||||| |||||  | |||  ||| |||   ||||||||||||||||| |||||||||||| ||||||| ||    
T  31903869 tttcatgtcctctttgaagttcttcatcgtcaataaaggtgtggattcccttatcataaagagctttgtagagatttccagtaaaaccatagcgagtgtc 31903770  T
Q  282 tgcacctgtgaaactgaggaagacatcataggtgaa 317  Q
    |   ||| | || |||||||| ||||| ||||||||    
T  31903769 taagcctctaaagctgaggaacacatcgtaggtgaa 31903734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 281
Target Start/End: Complemental strand, 12588478 - 12588365
Alignment:
Q  168 aagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaa 267  Q
    |||||| ||||||||||| || ||| ||| || ||| |||||||| ||||| || |||| |   ||||||  ||||||||| | |||||||||||| |||    
T  12588478 aagtgatggtgtgatttcttcgccttttttaatctccttgtcatccatgaaagttcgaactcctttgtcatctagagctttcttgagattgccagtgaaa 12588379  T
Q  268 ccaaagcgagtatc 281  Q
    ||  ||||||||||    
T  12588378 ccgtagcgagtatc 12588365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 16373281 - 16373366
Alignment:
Q  232 ttgtcagttagagctttgtagagattgccagtaaaaccaaagcgagtatctgcacctgtgaaactgaggaagacatcataggtgaa 317  Q
    |||||||| ||||||||||| ||||  || || | |||| | || ||||||| |||| ||||||||||||| ||||| ||||||||    
T  16373281 ttgtcagtcagagctttgtacagatatcccgttacaccatatcgcgtatctgaacctctgaaactgaggaacacatcgtaggtgaa 16373366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 46 - 173
Alignment:
Q  142 atcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagtta 241  Q
    |||||||||||||  || ||||| |  ||||| ||||||||||| || ||||||||||| || |||||||||||||||||    |||  ||||||||| |    
T  46 atcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaa 145  T
Q  242 gagctttgtagagattgccagtaaaacc 269  Q
    |||| |||||||||||||| ||||||||    
T  146 gagccttgtagagattgccggtaaaacc 173  T

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Target: scaffold0419 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 269
Target Start/End: Complemental strand, 7583 - 7456
Alignment:
Q  142 atcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagtta 241  Q
    |||||||||||||  || ||||| |  ||||| ||||||||||| || ||||||||||| || |||||||||||||||||    |||  ||||||||| |    
T  7583 atcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaa 7484  T
Q  242 gagctttgtagagattgccagtaaaacc 269  Q
    |||| |||||||||||||| ||||||||    
T  7483 gagccttgtagagattgccggtaaaacc 7456  T

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Target: scaffold0277 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 13761 - 13888
Alignment:
Q  142 atcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagtta 241  Q
    |||||||||||||  || ||||| |  ||||| ||||||||||| || ||||||||||| || |||||||||||||||||    |||  ||||||||| |    
T  13761 atcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaa 13860  T
Q  242 gagctttgtagagattgccagtaaaacc 269  Q
    |||| |||||||||||||| ||||||||    
T  13861 gagccttgtagagattgccggtaaaacc 13888  T

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Target: scaffold0277; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 269
Target Start/End: Original strand, 4833 - 4927
Alignment:
Q  175 ggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    ||||||||||| || ||||||||||| || |||||||||||||||||    |||  ||||||||| ||||| ||||||||||| || ||||||||    
T  4833 ggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaacc 4927  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 17993846 - 17993952
Alignment:
Q  175 ggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaaccaaagc 274  Q
    ||||||||||| || ||||| ||||||||||||||||| |||||||| ||||||  ||||||||  |||||||| |||||||| || || |||||| | |    
T  17993846 ggtgtgatttcatcacctctctgaagctctttgtcatcgatgaaggttcgaattcccttgtcagaaagagctttatagagattaccggtgaaaccatatc 17993945  T
Q  275 gagtatc 281  Q
    |||||||    
T  17993946 gagtatc 17993952  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 278
Target Start/End: Complemental strand, 16689069 - 16688933
Alignment:
Q  142 atcctagattcttgaatcgccttcacaagtgagggtgtgatttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagtta 241  Q
    ||||| || |||| ||| ||||| | |||||| |||||||||| ||| ||||| ||||| || |||||||||||||||  ||| |||  |||||||  ||    
T  16689069 atccttgagtcttcaattgccttgataagtgatggtgtgattttgtcacctctctgaagttccttgtcatcaatgaagacacggattcccttgtcacata 16688970  T
Q  242 gagctttgtagagattgccagtaaaaccaaagcgagt 278  Q
    |||||||||| ||||| |||||||||  |||||||||    
T  16688969 gagctttgtacagattaccagtaaaatgaaagcgagt 16688933  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 269
Target Start/End: Original strand, 268413 - 268600
Alignment:
Q  82 acaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtgtga 181  Q
    |||||||| || || ||||| |||||||| ||||| ||| |||| || | ||||||    |||||||| |||| ||| || ||  | ||||| ||| |||    
T  268413 acaagttcgtccaaacaaaatgaagaagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggcattgtcgagtgatggtttga 268512  T
Q  182 tttcgtcccctctttgaagctctttgtcatcaatgaaggtacgaattttcttgtcagttagagctttgtagagattgccagtaaaacc 269  Q
    |||| |||||||||||||| ||    ||||||||||||||  | |||  ||||||||| ||||| |||||||||| |||| |||||||    
T  268513 tttcatcccctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccaataaaacc 268600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 28127732 - 28127837
Alignment:
Q  79 tgcacaagttcatctaagcaaaacgaagaagaagcataattggtagagaaaataggaatggctatcctagattcttgaatcgccttcacaagtgagggtg 178  Q
    ||||||||||| || || ||||| |||||||| ||||| |||||||| || | ||||||    || |||||||||| ||| ||||| | |||||| ||||    
T  28127732 tgcacaagttcgtccaaacaaaatgaagaagaggcatagttggtagaaaatacaggaataaaaattctagattcttcaatggcctttaaaagtgacggtg 28127831  T
Q  179 tgattt 184  Q
    ||||||    
T  28127832 tgattt 28127837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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