View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7019_low_20 (Length: 233)
Name: NF7019_low_20
Description: NF7019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7019_low_20 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 20891996 - 20891776
Alignment:
| Q |
13 |
aatattgaaggcaagatattggatgttaaaaatcggatttctttccttgattctaaaggggaggagtttgatttgcttgaagatgaaacaaaggaaattc |
112 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20891996 |
aatattgaagacaagatattggatgttaaaaatcggatttctttccttgattctaaaggggaggagtttgatttgcttgaagatgaaacaaaggaaattt |
20891897 |
T |
|
| Q |
113 |
atgatctatcagttgagtggcattctttgtttcgtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattc |
212 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20891896 |
gtgatctatcagttgagttgcattctttgtttcgtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattc |
20891797 |
T |
|
| Q |
213 |
taaattctttcatcatgtgat |
233 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
20891796 |
taaattctttcatcatgtgat |
20891776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 21311048 - 21311140
Alignment:
| Q |
132 |
gcattctttgtttcgtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattctaaattctttca |
224 |
Q |
| |
|
|||||| |||| |||||||||||| |||||| ||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
21311048 |
gcattccttgtctcgtgtgcatactagtatgaattggcagaaggcgaggatgaattgggttagagaaggtgatgcaaattctaaattctttca |
21311140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 8307404 - 8307329
Alignment:
| Q |
146 |
gtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattctaaattctt |
221 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
8307404 |
gtgtgcatactagtatgaattggcagaaggcgatgatgaattgggttagagaaggtgatgcaaattctaaattctt |
8307329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 8749611 - 8749831
Alignment:
| Q |
13 |
aatattgaaggcaagatattggatgttaaaaatcggatttctttccttgattctaaaggggaggagtttgatttgcttgaagatgaaacaaaggaaattc |
112 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8749611 |
aatattgaagacaagatattggaagttaaaaatcgaatttctttcctcgactctaaaggggaggagtttgatttgcttgaaaatgaaacaaaggaaattc |
8749710 |
T |
|
| Q |
113 |
atgatctatcagttgagtggcattctttgtttcgtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattc |
212 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| || |||| | ||||| ||||| | | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
8749711 |
gtgatctatcagttgagttgcattctttgtttcgtatgcaaactagtacgagttggaagaaatcaagaatgaattgtgttaaggaaggagatgcaaattc |
8749810 |
T |
|
| Q |
213 |
taaattctttcatcatgtgat |
233 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8749811 |
taaattctttcatcatgtgat |
8749831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 32218056 - 32217967
Alignment:
| Q |
132 |
gcattctttgtttcgtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattctaaattctt |
221 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
32218056 |
gcattcattgtcacgtgtgcatactagtatgaattggcagaaagcgatgatgaattgggttagagaaggtgatgcaaattctaaattctt |
32217967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 5192754 - 5192962
Alignment:
| Q |
10 |
aagaatattgaaggcaagatattggatgttaaaaatcggatttctttccttgattctaaaggggaggagtttgatttgcttgaagatgaaacaaaggaaa |
109 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| ||||||| |||||| ||||||||||||||| |||||||| ||||||||||| ||||| | |
|
|
| T |
5192754 |
aagaatattgaaggcaagatattagatgttagaaatcgaatttcttcccttgacactaaaggggaggagtgcgatttgctagaagatgaaactaaggaga |
5192853 |
T |
|
| Q |
110 |
ttcatgatctatcagttgagtggcattctttgtttcgtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaa |
209 |
Q |
| |
|
||||||| | || ||| | | | |||| |||| |||||||||||| |||||| ||||||||| || | ||||| ||||| |||||||| ||||| || |
|
|
| T |
5192854 |
ttcatgagttgtctgttcaattgaattcattgtctcgtgtgcatactagtatgaattggcagaaggcaaggatgaactgggtaaaggaaggtgatgctaa |
5192953 |
T |
|
| Q |
210 |
ttctaaatt |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
5192954 |
ctctaaatt |
5192962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 2856938 - 2856845
Alignment:
| Q |
132 |
gcattctttgtttcgtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattctaaattctttcat |
225 |
Q |
| |
|
||||||||||| |||||||||||| |||||| ||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
2856938 |
gcattctttgtctcgtgtgcatactagtatgaattggcagaaggcgaggatgaattgggttagagaaggtaatgcaaattctaaattctttcat |
2856845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 18486970 - 18487079
Alignment:
| Q |
124 |
gttgagtggcattctttgtttcgtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattctaaattctttc |
223 |
Q |
| |
|
||||||| |||||| ||| |||||| |||| || ||| ||||||||| || | |||||||||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
18486970 |
gttgagttacattctatgtcacgtgtgtatactagcatgaattggcagaaggctagaatgaattgggttagggagggagatgcaaattctaaattttttc |
18487069 |
T |
|
| Q |
224 |
atcatgtgat |
233 |
Q |
| |
|
|| ||||||| |
|
|
| T |
18487070 |
ataatgtgat |
18487079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 16480379 - 16480326
Alignment:
| Q |
165 |
ttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattctaaatt |
218 |
Q |
| |
|
||||||||| || | |||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
16480379 |
ttggcagaaggctagaatgaaatgggttagggagggagatgcaaattctaaatt |
16480326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 15138360 - 15138568
Alignment:
| Q |
10 |
aagaatattgaaggcaagatattggatgttaaaaatcggatttctttccttgattctaaaggggaggagtttgatttgcttgaagatgaaacaaaggaaa |
109 |
Q |
| |
|
||||| |||||||||||||| ||||| || || ||| | ||||| | ||| || |||||||||||||||| ||||||||||| | |||||||||||| | |
|
|
| T |
15138360 |
aagaacattgaaggcaagattttggaggtaaacaatagaatttcctccctagacactaaaggggaggagttcgatttgcttgaggctgaaacaaaggaga |
15138459 |
T |
|
| Q |
110 |
ttcatgatctatcagttgagtggcattctttgtttcgtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaa |
209 |
Q |
| |
|
||| || | ||| |||| | ||||||||||| || ||||||||| | |||| ||||||||| || ||||||||||| |||||||||||||| || |
|
|
| T |
15138460 |
ttcgcgagttgtcaattgaattgcattctttgtctcatgtgcatactattatgaattggcagaaggcagggatgaattgggtaaaggaaggagatgcgaa |
15138559 |
T |
|
| Q |
210 |
ttctaaatt |
218 |
Q |
| |
|
||||||||| |
|
|
| T |
15138560 |
ttctaaatt |
15138568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 45470984 - 45470904
Alignment:
| Q |
132 |
gcattctttgtttcgtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattc |
212 |
Q |
| |
|
||||||||||| |||||||||||| |||||| ||||||||| ||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
45470984 |
gcattctttgtctcgtgtgcatactagtatgaattggcagaaggcggggatgaattgggtaaaggaaggagatgctaattc |
45470904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 22872365 - 22872277
Alignment:
| Q |
145 |
cgtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattctaaattctttcatcatgtgat |
233 |
Q |
| |
|
|||||| |||| |||||| |||| |||| |||| ||||||||||||||||||| || || ||||| |||||||||||| ||||||| |
|
|
| T |
22872365 |
cgtgtgaatactagtatgaattggtagaaggcgatggtgaattgggttaaggaaggtgacgctaattcaaaattctttcataatgtgat |
22872277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 45704008 - 45703928
Alignment:
| Q |
132 |
gcattctttgtttcgtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattc |
212 |
Q |
| |
|
||||||||||| |||||||||||| |||||| ||||||||| |||| ||||||||| | || |||| |||||| ||||| |
|
|
| T |
45704008 |
gcattctttgtctcgtgtgcatactagtatgaattggcagaaggcgaggatgaattggttaaaagaagaagatgctaattc |
45703928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 17190232 - 17190012
Alignment:
| Q |
13 |
aatattgaaggcaagatattggatgttaaaaatcggatttctttccttgattctaaaggggaggagtttgatttgcttgaagatgaaacaaaggaaattc |
112 |
Q |
| |
|
||||||||||| ||||| |||| |||||| ||| ||||||| ||| || |||||||||||||| |||||||||||||| |||| ||||| ||| |
|
|
| T |
17190232 |
aatattgaaggtaagattttgggatttaaaagtcgaatttcttccctcgacactaaaggggaggaggccgatttgcttgaagaagaaatttaggaacttc |
17190133 |
T |
|
| Q |
113 |
atgatctatcagttgagtggcattctttgtttcgtgtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattc |
212 |
Q |
| |
|
| || | ||||| | | ||||| ||||| ||| ||||||| |||||| ||||||||| |||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
17190132 |
acgagttgtcagtgaatttgcattatttgtctcgcgtgcatagtagtatgatttggcagaaggcgaggatgaattgggtaaaggaaggagatgctaattc |
17190033 |
T |
|
| Q |
213 |
taaattctttcatcatgtgat |
233 |
Q |
| |
|
||||| || ||| ||||||| |
|
|
| T |
17190032 |
caaatttttccataatgtgat |
17190012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 22742699 - 22742614
Alignment:
| Q |
148 |
gtgcataccagtatgtgttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattctaaattctttcatcatgtgat |
233 |
Q |
| |
|
||||| || |||||| |||||||||||||| |||| | ||||| | |||||| ||||||||||||||||| || ||| ||||||| |
|
|
| T |
22742699 |
gtgcaaactagtatgaattggcagaaagcgagaatgcaatgggtaacggaaggtgatgcaaattctaaatttttccataatgtgat |
22742614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 21822531 - 21822584
Alignment:
| Q |
165 |
ttggcagaaagcgaaaatgaattgggttaaggaaggagatgcaaattctaaatt |
218 |
Q |
| |
|
||||||||| || | |||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
21822531 |
ttggcagaaggctagaatgaaatgggttagggagggagatgcaaattctaaatt |
21822584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University