View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7019_low_21 (Length: 229)

Name: NF7019_low_21

Description: NF7019

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7019_low_21

[»] chr4 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 177; E-Value: 1e-95

Query Start/End: Original strand, 18 - 214

Target Start/End: Original strand, 26913241 - 26913437

Alignment:

Q	18	caaaccacctactcacttttcctaggtttgaatccgaagctaaactaccgactcatttttatggcggttttgaaaaccatgaacaaatgctgaaaaatga	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	26913241	caaaccacctacccacttttcctaggtttgaatccgaagctaaactaccgacccattttcatggcagttttgaaaaccatgaacaagtgctgaaaaatga	26913340	T

Q	118	catggtggtggagccatttatcgagggtgatgattcaaacaatgtttttcatgaggttgtaagtggtggtgaaatggaacaccgtcgttctcatggg	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26913341	catggtggtggagccatttatcgagggtgatgattcaaacaatgtttttcatgaggttgtaagtggtggtgaaatggaacaccgtcgttctcatggg	26913437	T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 140 - 206

Target Start/End: Complemental strand, 3804569 - 3804503

Alignment:

Q	140	gagggtgatgattcaaacaatgtttttcatgaggttgtaagtggtggtgaaatggaacaccgtcgtt	206	Q
		\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3804569	gagggtggtgatgcaaaccatgcttttcatgaggttattagtggtggagaaatggaacaccgtcgtt	3804503	T

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