View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7019_low_23 (Length: 224)
Name: NF7019_low_23
Description: NF7019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7019_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 32184122 - 32183923
Alignment:
| Q |
8 |
ttggtgttgggttgatgagaagtggatacaattttttgtgggttgttaaggataagattgttgacaaagaagataaagaagttgggttagatgaggtttt |
107 |
Q |
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| T |
32184122 |
ttggtgatgggttgatgagaagtggatacaattttttgtgggttgttaaggataagattgttgacaaagaagataaagaagttgggttagatgaggtttt |
32184023 |
T |
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| Q |
108 |
aggagttgagttggtagagagaatgaagaaaaaaggtttggtagttaaggaatgggtggatcaaagtgagattttgagtcacaaaagtataggaggattt |
207 |
Q |
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| T |
32184022 |
aggagttgagttggtagagagaatgaagaaaaaaggtttggtagttaaggaatgggtggatcaaagtgagattttgagtcacaaaagtataggaggattt |
32183923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 32176952 - 32176768
Alignment:
| Q |
8 |
ttggtgttgggttgatgagaagtggatacaattttttgtgggttgttaaggataagattgttgacaaagaagataaagaagttgggttagatgaggtttt |
107 |
Q |
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| T |
32176952 |
ttggtgatggattgatgaggagtggatacaaatttttgtgggtggtgaaggataagattgttgacaaagaaga---agaagtggggttagatgaggtttt |
32176856 |
T |
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| Q |
108 |
aggagttgagttggtagagagaatgaagaaaaaaggtttggtagttaaggaatgggtggatcaaagtgagattttgagtcacaaaagt |
195 |
Q |
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| T |
32176855 |
aggggttgagttggtggagaaaatgaaggatagagggttggtggttaaagaatgggtggatcaaagtgagattttgagtcataaaagt |
32176768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 21004110 - 21004288
Alignment:
| Q |
15 |
tgggttgatgagaagtggatacaattttttgtgggttgttaaggataagattgttgacaaagaagataaagaagttgggttagatgaggttttaggagtt |
114 |
Q |
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| T |
21004110 |
tgggttgatgaaaagtggacataaatttttgtgggtggttaaggataagattgttgacaaggaagatgtataactgaggttagatgaggtattgggtgtt |
21004209 |
T |
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| Q |
115 |
gagttggtagagagaatgaagaaaaaaggtttggtagttaaggaatgggtggatcaaagtgagattttgagtcacaaaagt |
195 |
Q |
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| T |
21004210 |
gagttggtagagagaatgaaggaaaaggggttggtggt--ggttatgggttgatccaagtgagattttgaatcacaaaagt |
21004288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 22778253 - 22778355
Alignment:
| Q |
61 |
aagattgttgacaaagaagataaagaagttgggttagatgaggttttaggagttgagttggtagagagaatgaagaaaaaaggtttggtagttaaggaat |
160 |
Q |
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|||||||||||||||||||| |||| | ||||||||||||| | || |||||||||||||||||||||||| |||| | ||||| ||| |||||| |
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| T |
22778253 |
aagattgttgacaaagaagacgtagaactgaggttagatgaggtagtgggtgttgagttggtagagagaatgaaggaaaaggagttggtggttgaggaat |
22778352 |
T |
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| Q |
161 |
ggg |
163 |
Q |
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||| |
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| T |
22778353 |
ggg |
22778355 |
T |
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