View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7019_low_5 (Length: 510)

Name: NF7019_low_5
Description: NF7019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7019_low_5
NF7019_low_5
[»] chr6 (38 HSPs)
chr6 (105-495)||(17168375-17168766)
chr6 (90-202)||(17150054-17150164)
chr6 (90-208)||(17136519-17136635)
chr6 (321-410)||(6389716-6389805)
chr6 (307-410)||(2153884-2153987)
chr6 (355-474)||(34446572-34446691)
chr6 (311-385)||(7625085-7625159)
chr6 (347-411)||(19602177-19602241)
chr6 (355-434)||(26247433-26247512)
chr6 (294-401)||(7938062-7938169)
chr6 (294-473)||(17327590-17327768)
chr6 (356-411)||(30781290-30781345)
chr6 (311-381)||(1893395-1893465)
chr6 (341-407)||(12086345-12086411)
chr6 (355-405)||(12235521-12235571)
chr6 (294-388)||(21395327-21395420)
chr6 (355-403)||(6299519-6299567)
chr6 (355-403)||(6306329-6306377)
chr6 (334-374)||(10760874-10760914)
chr6 (349-381)||(33135833-33135865)
chr6 (333-388)||(677822-677877)
chr6 (294-401)||(7086741-7086848)
chr6 (335-417)||(9024166-9024248)
chr6 (321-388)||(10770693-10770760)
chr6 (335-390)||(17422272-17422327)
chr6 (334-381)||(33135569-33135616)
chr6 (349-415)||(8389465-8389530)
chr6 (296-401)||(5732516-5732621)
chr6 (323-388)||(8805591-8805656)
chr6 (356-401)||(9195760-9195805)
chr6 (334-383)||(13211305-13211354)
chr6 (356-405)||(24832596-24832645)
chr6 (323-388)||(34447377-34447442)
chr6 (355-400)||(34895041-34895086)
chr6 (324-388)||(7996397-7996461)
chr6 (324-388)||(8022340-8022404)
chr6 (334-374)||(33303645-33303685)
chr6 (401-473)||(34595182-34595253)
[»] chr5 (22 HSPs)
chr5 (355-428)||(43554528-43554601)
chr5 (294-417)||(26205750-26205873)
chr5 (357-417)||(39695989-39696049)
chr5 (328-411)||(5467974-5468057)
chr5 (321-434)||(25863177-25863290)
chr5 (335-407)||(7997166-7997238)
chr5 (311-372)||(17123011-17123072)
chr5 (356-405)||(31264446-31264495)
chr5 (364-412)||(36577671-36577719)
chr5 (355-394)||(2577193-2577232)
chr5 (355-410)||(18607094-18607149)
chr5 (355-397)||(42469228-42469270)
chr5 (333-374)||(7089126-7089167)
chr5 (333-374)||(9878065-9878106)
chr5 (335-428)||(14574029-14574121)
chr5 (335-388)||(24906320-24906373)
chr5 (356-388)||(12927662-12927694)
chr5 (333-373)||(21049653-21049693)
chr5 (356-408)||(21137697-21137749)
chr5 (401-473)||(21576685-21576756)
chr5 (333-381)||(32444751-32444799)
chr5 (333-381)||(39205865-39205913)
[»] chr3 (26 HSPs)
chr3 (321-428)||(14223832-14223939)
chr3 (334-427)||(25652011-25652104)
chr3 (354-417)||(25892466-25892529)
chr3 (355-473)||(25074796-25074914)
chr3 (345-435)||(27903629-27903719)
chr3 (355-407)||(15864840-15864892)
chr3 (355-417)||(12704647-12704709)
chr3 (294-407)||(24205041-24205154)
chr3 (360-418)||(21367289-21367347)
chr3 (355-413)||(52369782-52369840)
chr3 (321-381)||(10504929-10504989)
chr3 (355-427)||(25326433-25326505)
chr3 (334-414)||(41319303-41319383)
chr3 (355-474)||(21211295-21211414)
chr3 (355-405)||(3730167-3730217)
chr3 (335-401)||(20691306-20691372)
chr3 (356-417)||(34307770-34307831)
chr3 (356-402)||(1830351-1830397)
chr3 (355-417)||(8903439-8903500)
chr3 (294-388)||(10268505-10268599)
chr3 (294-388)||(10335305-10335399)
chr3 (355-401)||(40150577-40150623)
chr3 (337-374)||(18268038-18268075)
chr3 (355-404)||(34189434-34189483)
chr3 (355-427)||(16789635-16789702)
chr3 (355-407)||(25365469-25365521)
[»] chr2 (22 HSPs)
chr2 (310-413)||(23354646-23354749)
chr2 (355-411)||(25544488-25544544)
chr2 (355-413)||(23354989-23355047)
chr2 (355-411)||(24011043-24011099)
chr2 (334-434)||(37986765-37986865)
chr2 (358-413)||(11307998-11308053)
chr2 (355-413)||(38919213-38919271)
chr2 (355-409)||(10535757-10535811)
chr2 (355-417)||(19573985-19574047)
chr2 (399-452)||(13272954-13273007)
chr2 (355-407)||(12748691-12748743)
chr2 (334-374)||(19608389-19608429)
chr2 (334-401)||(30527601-30527668)
chr2 (355-401)||(6249206-6249252)
chr2 (334-388)||(20539693-20539747)
chr2 (335-381)||(25543221-25543267)
chr2 (355-401)||(34006997-34007043)
chr2 (334-372)||(43188157-43188195)
chr2 (333-374)||(12464882-12464923)
chr2 (328-401)||(31018570-31018643)
chr2 (355-426)||(6698440-6698512)
chr2 (355-411)||(30563416-30563472)
[»] chr7 (23 HSPs)
chr7 (355-413)||(29812658-29812716)
chr7 (334-434)||(4017767-4017867)
chr7 (358-474)||(7133211-7133327)
chr7 (355-407)||(23751907-23751959)
chr7 (294-388)||(5235932-5236026)
chr7 (334-414)||(23930205-23930285)
chr7 (329-381)||(30516383-30516435)
chr7 (312-412)||(43249957-43250057)
chr7 (355-417)||(38804545-38804607)
chr7 (337-374)||(927870-927907)
chr7 (355-428)||(17780063-17780136)
chr7 (355-404)||(22683758-22683807)
chr7 (347-407)||(12278834-12278894)
chr7 (321-401)||(15902795-15902875)
chr7 (335-374)||(30177037-30177076)
chr7 (355-417)||(10230063-10230125)
chr7 (335-381)||(17285051-17285097)
chr7 (294-388)||(25481848-25481942)
chr7 (294-371)||(26329418-26329495)
chr7 (293-401)||(21140988-21141096)
chr7 (349-401)||(23128667-23128719)
chr7 (294-390)||(29763191-29763287)
chr7 (349-393)||(46644701-46644745)
[»] chr4 (22 HSPs)
chr4 (355-434)||(3144625-3144704)
chr4 (294-428)||(24343453-24343587)
chr4 (335-412)||(20743273-20743350)
chr4 (335-428)||(8820395-8820488)
chr4 (368-417)||(23386166-23386215)
chr4 (349-410)||(31243545-31243606)
chr4 (357-413)||(6273953-6274009)
chr4 (357-397)||(49659533-49659573)
chr4 (395-473)||(4136267-4136344)
chr4 (355-473)||(53381530-53381644)
chr4 (329-388)||(21539886-21539945)
chr4 (358-428)||(944647-944717)
chr4 (328-378)||(9299083-9299133)
chr4 (350-412)||(17876157-17876219)
chr4 (334-388)||(36635310-36635364)
chr4 (349-399)||(50848311-50848361)
chr4 (335-400)||(34515881-34515946)
chr4 (334-399)||(55941011-55941076)
chr4 (312-388)||(21945467-21945543)
chr4 (336-372)||(25216905-25216941)
chr4 (355-399)||(39507127-39507171)
chr4 (355-399)||(47191001-47191045)
[»] chr1 (21 HSPs)
chr1 (355-417)||(42004937-42004999)
chr1 (335-417)||(6936390-6936472)
chr1 (311-405)||(22794080-22794174)
chr1 (294-388)||(37055875-37055968)
chr1 (358-406)||(6573999-6574047)
chr1 (355-417)||(40747763-40747825)
chr1 (334-388)||(41017423-41017477)
chr1 (355-388)||(23440017-23440050)
chr1 (328-401)||(36878441-36878514)
chr1 (335-388)||(43328454-43328507)
chr1 (294-381)||(609484-609571)
chr1 (394-473)||(32899931-32900010)
chr1 (355-410)||(39101179-39101234)
chr1 (294-401)||(40285660-40285767)
chr1 (355-413)||(11634118-11634176)
chr1 (340-381)||(3921659-3921700)
chr1 (319-388)||(8842733-8842802)
chr1 (337-381)||(2445859-2445903)
chr1 (296-372)||(25452183-25452259)
chr1 (349-401)||(39130773-39130825)
chr1 (368-404)||(48415728-48415764)
[»] chr8 (19 HSPs)
chr8 (349-413)||(13845235-13845299)
chr8 (355-407)||(39820436-39820488)
chr8 (355-407)||(35431140-35431192)
chr8 (355-410)||(13009490-13009545)
chr8 (334-417)||(26915230-26915313)
chr8 (294-372)||(926823-926901)
chr8 (349-411)||(40063952-40064014)
chr8 (334-412)||(44067502-44067580)
chr8 (355-407)||(1676719-1676771)
chr8 (334-417)||(3658133-3658216)
chr8 (336-381)||(14227210-14227255)
chr8 (313-388)||(4673444-4673519)
chr8 (321-372)||(10170421-10170472)
chr8 (334-381)||(11815815-11815862)
chr8 (354-405)||(28883880-28883931)
chr8 (356-394)||(12559119-12559157)
chr8 (340-417)||(14513164-14513241)
chr8 (341-381)||(2648274-2648314)
chr8 (349-381)||(34201072-34201104)
[»] scaffold0199 (1 HSPs)
scaffold0199 (355-407)||(1956-2008)
[»] scaffold0598 (1 HSPs)
scaffold0598 (334-413)||(8047-8126)
[»] scaffold0022 (1 HSPs)
scaffold0022 (322-388)||(90817-90883)
[»] scaffold0007 (1 HSPs)
scaffold0007 (294-412)||(225263-225381)
[»] scaffold0049 (1 HSPs)
scaffold0049 (358-400)||(56932-56974)
[»] scaffold0024 (1 HSPs)
scaffold0024 (356-400)||(68249-68293)


Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 105 - 495
Target Start/End: Complemental strand, 17168766 - 17168375
Alignment:
Q  105 tttcttcataaat-ttttactgttatatttttagccttaatattcagggttggaacatgatgctgcttcttggagtaagttcagcagtaaggtgagtgac 203  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17168766 tttcttcataattgttttactgttatatttttagccttaatattcagggttggaacatgatgctgcttcttggagtaagttcagcagtaaggtgagtgac 17168667  T
Q  204 tataaactaaacacattagagttgaaaacatttataaaatcctataaatttgacttataaggggaattgaaatctggtgatatatttgcaatgaagcacg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  17168666 tataaactaaacacattagagttgaaaacatttataaaatcctataaatttgacttatatggggaattgaaatctggtgatatatttgaaatgaagcacg 17168567  T
Q  304 aatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtg 403  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  17168566 aatacaaacacggaaatcggacatgacatagacactgacacgccaacactgataataatttgagaaaatgatataatttagtgtaataataggtgtcgtg 17168467  T
Q  404 tcggtgtcggacactgacacgtgtctaacactagggcacccctaatccgtggaatgtacttgcttcatagtggtcaatatatagatctttct 495  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17168466 tcggtgtcggacactgacacgtgtctaacactaggacacccctaatccgtggaatgtacttgcttcatagtagtcaatatatagatctttct 17168375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 17150164 - 17150054
Alignment:
Q  90 tcttggtttcttggttttcttcataaatttttactgttatatttttagccttaatattcagggttggaacatgatgctgcttcttggagtaagttcagca 189  Q
    |||||| || |||||||||||||  |||||| ||| |||||||||||||||||||||||||||||||||    ||||||||||||||| ||||| |||||    
T  17150164 tcttgggttattggttttcttca--aattttgacttttatatttttagccttaatattcagggttggaatgccatgctgcttcttggactaagtacagca 17150067  T
Q  190 gtaaggtgagtga 202  Q
     ||||||||||||    
T  17150066 ctaaggtgagtga 17150054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 17136635 - 17136519
Alignment:
Q  90 tcttggtttcttggttttcttcataaatttttactgttatatttttagccttaatattcagggttggaacatgatgctgcttcttggagtaagttcagca 189  Q
    ||||||||||||||||||||||||| ||||  ||| |  |  |||||| |||||||||||||||||||||   ||||||||||||||||||||| |||||    
T  17136635 tcttggtttcttggttttcttcatatattt--actttattgcttttagtcttaatattcagggttggaactccatgctgcttcttggagtaagtacagca 17136538  T
Q  190 gtaaggtgagtgactataa 208  Q
     |||||||||| |||||||    
T  17136537 ttaaggtgagtaactataa 17136519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 321 - 410
Target Start/End: Original strand, 6389716 - 6389805
Alignment:
Q  321 cggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgt 410  Q
    |||||| ||||  |||||| ||||| | ||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6389716 cggacacgacacggacactcacacgccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 6389805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 410
Target Start/End: Complemental strand, 2153987 - 2153884
Alignment:
Q  307 acaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcg 406  Q
    ||||||||||| |||||||||||||  ||||| |||||| | |||| || |||||||| ||||||||||||||||||||||| | |||||||||| || |    
T  2153987 acaaacacggacatcggacatgacacggacaccgacacgccgacacgaacaataatttaagaaaatgatataatttagtgtaattataggtgtcgcgttg 2153888  T
Q  407 gtgt 410  Q
    ||||    
T  2153887 gtgt 2153884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 474
Target Start/End: Original strand, 34446572 - 34446691
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtctaacactagggcacccctaatccgtg 454  Q
    |||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||  |||| ||| ||| ||| ||||| || ||| ||||||||  |    
T  34446572 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtccaacaccgacgcgtatctgacactgggacacacctaatccaag 34446671  T
Q  455 gaatgtacttgcttcatagt 474  Q
    || ||| | |||||||||||    
T  34446672 gagtgtccgtgcttcatagt 34446691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 385
Target Start/End: Original strand, 7625085 - 7625159
Alignment:
Q  311 acacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagt 385  Q
    ||||||| |||||||| |||| |||||| |||||||| ||||  |||||||||||||||||||||||||||||||    
T  7625085 acacggacatcggacacgacacagacaccgacacgtcgacacggataataatttgagaaaatgatataatttagt 7625159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 411
Target Start/End: Complemental strand, 19602241 - 19602177
Alignment:
Q  347 caacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtc 411  Q
    ||||||| ||||||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  19602241 caacactgataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcggtgtc 19602177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 355 - 434
Target Start/End: Original strand, 26247433 - 26247512
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtctaacac 434  Q
    |||||||||| ||||||||| ||| |||||| || |||||||| |||||||||||||||||||  |||||||||| ||||    
T  26247433 ataataatttaagaaaatgacatattttagtataatcataggtttcgtgtcggtgtcggacaccaacacgtgtctgacac 26247512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 401
Target Start/End: Original strand, 7938062 - 7938169
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcat 393  Q
    |||||||||| ||||  ||||||| | |||||| ||||| |||||||||||| | ||||   ||||||||||| ||||| ||||||||||||||| | ||    
T  7938062 atgaagcacggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattat 7938161  T
Q  394 aggtgtcg 401  Q
    | ||||||    
T  7938162 aagtgtcg 7938169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 473
Target Start/End: Complemental strand, 17327768 - 17327590
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcat 393  Q
    ||||| |||| |||| | |||||| | |||||| |||||||||| ||| ||| | |||| | ||| | ||||||||||| | |||||||||||||   ||    
T  17327768 atgaaccacggatacgaccacggataccggacacgacatagacagtgatacgccgacacaactaagattttgagaaaatcacataatttagtgtaactat 17327669  T
Q  394 aggtgtc-gtgtcggtgtcggacactgacacgtgtctaacactagggcacccctaatccgtggaatgtacttgcttcatag 473  Q
    | ||||| ||||| ||||||||||| ||||||||||| ||||  || ||| ||||||||| ||| ||| | ||||||||||    
T  17327668 atgtgtcagtgtc-gtgtcggacac-gacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 17327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 30781345 - 30781290
Alignment:
Q  356 taataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtc 411  Q
    ||||||||||||||||||| |||||| | |||| ||||||||||| ||||||||||    
T  30781345 taataatttgagaaaatgacataattaattgtaatcataggtgtcatgtcggtgtc 30781290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 381
Target Start/End: Complemental strand, 1893465 - 1893395
Alignment:
Q  311 acacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    ||||||| || ||||| |||| | |||| |||| |||| ||| ||||||||||||||||||||||||||||    
T  1893465 acacggacattggacacgacacatacacggacatgtcatcaccaataataatttgagaaaatgatataatt 1893395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 407
Target Start/End: Complemental strand, 12086411 - 12086345
Alignment:
Q  341 acacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcgg 407  Q
    ||||||| ||||  |||||||||||||| ||||| |||||| ||| || ||||||||||||||||||    
T  12086411 acacgtcgacacggataataatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 12086345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 12235571 - 12235521
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtc 405  Q
    ||||||||| |||||||||| |||||| |||||| ||||||||||||||||    
T  12235571 ataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgtc 12235521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 388
Target Start/End: Complemental strand, 21395420 - 21395327
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    |||||||||| ||||| |||| || | |||| ||||||| ||||| |||||| ||||||   ||||||||||||||||| | |||||||||||||    
T  21395420 atgaagcacggatacagacacagacaccggatatgacatggacaccgacacgccaacaccgctaataatttgagaaaat-acataatttagtgta 21395327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 6299519 - 6299567
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtg 403  Q
    ||||||||||||||||||||||||||| | |||| | ||||||||||||    
T  6299519 ataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6299567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 6306329 - 6306377
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtg 403  Q
    ||||||||||||||||||||||||||| | |||| | ||||||||||||    
T  6306329 ataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6306377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 10760914 - 10760874
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatga 374  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  10760914 gacactgacacgtcgacactgataataatttgagaaaatga 10760874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 33135833 - 33135865
Alignment:
Q  349 acactaataataatttgagaaaatgatataatt 381  Q
    |||||||||||||||||||||||||||||||||    
T  33135833 acactaataataatttgagaaaatgatataatt 33135865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 677822 - 677877
Alignment:
Q  333 agacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    ||||||||||||| | |||||  ||||||||||||||||| ||||||| |||||||    
T  677822 agacactgacacgccgacactgttaataatttgagaaaatcatataatatagtgta 677877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 401
Target Start/End: Original strand, 7086741 - 7086848
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcat 393  Q
    |||||||| | ||||||||||  | | | |||| |||| |||||| ||||||||  ||||  ||||||||||||||||| | ||||||||||||| | ||    
T  7086741 atgaagcatggatacaaacacaaataccagacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaattat 7086840  T
Q  394 aggtgtcg 401  Q
    | ||||||    
T  7086841 atgtgtcg 7086848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 417
Target Start/End: Complemental strand, 9024248 - 9024166
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtc-gtgtcggtgtcggacac 417  Q
    |||| |||||||| |||| ||| ||||||||||||||||| |||||| | |||| ||||| ||||| ||||| |||||||||||    
T  9024248 acacggacacgtcgacacaaatgataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtc-gtgtcggacac 9024166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 388
Target Start/End: Complemental strand, 10770760 - 10770693
Alignment:
Q  321 cggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    |||||| ||||| |||||||||||| |||||| | ||||||||||| ||||| | |||||| ||||||    
T  10770760 cggacacgacatggacactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgta 10770693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 390
Target Start/End: Complemental strand, 17422327 - 17422272
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagt 390  Q
    ||||| ||||||| ||||  ||||||||||||||||||||||||||| | ||||||    
T  17422327 acactaacacgtcgacaccgataataatttgagaaaatgatataattgaatgtagt 17422272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 381
Target Start/End: Original strand, 33135569 - 33135616
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    |||||||||| |||||||||| || || ||||||||||||||||||||    
T  33135569 gacactgacatgtcaacactattagtattttgagaaaatgatataatt 33135616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 415
Target Start/End: Complemental strand, 8389530 - 8389465
Alignment:
Q  349 acactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggac 415  Q
    |||||| ||||||||| ||||||| |||||||| |||||| | |||| |||| ||||||||||||||    
T  8389530 acactactaataatttaagaaaatcatataattcagtgtaattatag-tgtcatgtcggtgtcggac 8389465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 401
Target Start/End: Complemental strand, 5732621 - 5732516
Alignment:
Q  296 gaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcatag 395  Q
    |||||| | ||||| ||||||| |  ||||| ||||| |||||||||||| | ||||   ||||||||||||||||| | ||| ||||||||| | |||     
T  5732621 gaagcatggatacagacacggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaattatat 5732522  T
Q  396 gtgtcg 401  Q
    ||||||    
T  5732521 gtgtcg 5732516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 8805656 - 8805591
Alignment:
Q  323 gacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    |||| |||| |||||| ||||||||  ||||  ||||||||||||||||| | |||||||||||||    
T  8805656 gacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgta 8805591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 9195805 - 9195760
Alignment:
Q  356 taataatttgagaaaatgatataatttagtgtagtcataggtgtcg 401  Q
    ||||||||||||||||||| ||||||||||||| | ||| ||||||    
T  9195805 taataatttgagaaaatgacataatttagtgtaattatatgtgtcg 9195760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 13211354 - 13211305
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataattta 383  Q
    ||||| |||||||| ||| | |||||||||||||||||||| ||||||||    
T  13211354 gacaccgacacgtcgacattgataataatttgagaaaatgacataattta 13211305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 24832596 - 24832645
Alignment:
Q  356 taataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtc 405  Q
    |||||||||||||||||  |||||||||||||| | ||| ||||||||||    
T  24832596 taataatttgagaaaatcttataatttagtgtaattatatgtgtcgtgtc 24832645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 34447442 - 34447377
Alignment:
Q  323 gacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    ||||| ||| ||||| ||||||| ||||||   ||||||||||| ||||| |||||||||||||||    
T  34447442 gacataacacagacaatgacacgccaacaccgttaataatttgataaaatcatataatttagtgta 34447377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 400
Target Start/End: Complemental strand, 34895086 - 34895041
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtc 400  Q
    |||||||||||||||||| ||| |||| |||||| |||||||||||    
T  34895086 ataataatttgagaaaattatacaattcagtgtaatcataggtgtc 34895041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 388
Target Start/End: Complemental strand, 7996461 - 7996397
Alignment:
Q  324 acatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    ||||||||  |||||||||| | | |||||  ||||||||||||||||| |||||||| ||||||    
T  7996461 acatgacaaggacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgta 7996397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 8022340 - 8022404
Alignment:
Q  324 acatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    ||||||||  |||||||||| | | |||||  ||||||||||||||||| |||||||| ||||||    
T  8022340 acatgacaaggacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgta 8022404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 33303645 - 33303685
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatga 374  Q
    ||||||||||| || |||||||||||||||||| |||||||    
T  33303645 gacactgacacatcgacactaataataatttgaaaaaatga 33303685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 473
Target Start/End: Original strand, 34595182 - 34595253
Alignment:
Q  401 gtgtcggtgtcggacactgacacgtgtctaacactagggcacccctaatccgtggaatgtacttgcttcatag 473  Q
    ||||||||||||||||| ||||||||||| ||||  || ||| ||||||||| ||| ||| | ||||||||||    
T  34595182 gtgtcggtgtcggacac-gacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 355 - 428
Target Start/End: Original strand, 43554528 - 43554601
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtc 428  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggacaccgacgcgtgtc 43554601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 294 - 417
Target Start/End: Complemental strand, 26205873 - 26205750
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcat 393  Q
    |||||||| | | ||| ||||||| | |||||||||||| |||||||||||||| | ||  |||| | ||||||||||||| |||||| |||||| ||||    
T  26205873 atgaagcatggacacagacacggacaccggacatgacatggacactgacacgtcgataccgataaaattttgagaaaatgacataattcagtgtaatcat 26205774  T
Q  394 aggtgtcgtgtcggtgtcggacac 417  Q
    ||||||||||| ||||||||||||    
T  26205773 aggtgtcgtgttggtgtcggacac 26205750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 39696049 - 39695989
Alignment:
Q  357 aataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  39696049 aataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtccgacac 39695989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 411
Target Start/End: Complemental strand, 5468057 - 5467974
Alignment:
Q  328 gacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtc 411  Q
    |||||||||||||||||||||| ||  |||||||||||| ||||| | |||||| |||||| | ||||||||||||||||||||    
T  5468057 gacatagacactgacacgtcaataccgataataatttgataaaatcacataattcagtgtaattataggtgtcgtgtcggtgtc 5467974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 434
Target Start/End: Original strand, 25863177 - 25863290
Alignment:
Q  321 cggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactga 420  Q
    |||||| |||| |||||  |||||||| |||   ||||||||||||||||||||||||||| |||||| | ||| |||||||||| ||||||| ||| ||    
T  25863177 cggacacgacacagacatcgacacgtcgacatgtataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtcagtgtcgggcaccga 25863276  T
Q  421 cacgtgtctaacac 434  Q
      ||||||| ||||    
T  25863277 tgcgtgtctgacac 25863290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 407
Target Start/End: Complemental strand, 7997238 - 7997166
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcgg 407  Q
    ||||||||||| ||||||  ||||||||||||||||||||||||||  |||||| | ||| ||||||||||||    
T  7997238 acactgacacgccaacacggataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgtcgg 7997166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 17123011 - 17123072
Alignment:
Q  311 acacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaat 372  Q
    ||||||| ||||||||| |||| |||||||||||| ||||||   |||||||||||||||||    
T  17123011 acacggacatcggacataacatggacactgacacgccaacaccgctaataatttgagaaaat 17123072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 31264446 - 31264495
Alignment:
Q  356 taataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtc 405  Q
    ||||||||||||||||||| |||||| |||||| ||||| ||||||||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgtc 31264495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 36577719 - 36577671
Alignment:
Q  364 tgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcg 412  Q
    |||||||||||||||||||||| || | ||| |||||||||||||||||    
T  36577719 tgagaaaatgatataatttagtataattatatgtgtcgtgtcggtgtcg 36577671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 2577232 - 2577193
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcata 394  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  2577232 ataataatttgagaaaatgacataatttagtgtaatcata 2577193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 18607149 - 18607094
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgt 410  Q
    |||||||||||||||||| | |||||| | |||| |||||||||||||||| ||||    
T  18607149 ataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgtctgtgt 18607094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 42469228 - 42469270
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggt 397  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||    
T  42469228 ataataatttgagaaaatgacatattttagtgtaatcataggt 42469270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 7089167 - 7089126
Alignment:
Q  333 agacactgacacgtcaacactaataataatttgagaaaatga 374  Q
    ||||||| |||  |||||||||||||||||||||||||||||    
T  7089167 agacactaacatatcaacactaataataatttgagaaaatga 7089126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 9878106 - 9878065
Alignment:
Q  333 agacactgacacgtcaacactaataataatttgagaaaatga 374  Q
    ||||||||||||||| |||| |||||||||||||||| ||||    
T  9878106 agacactgacacgtcgacaccaataataatttgagaatatga 9878065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 428
Target Start/End: Complemental strand, 14574121 - 14574029
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtc 428  Q
    |||| |||||| | |||| | |||||||||||  ||||||||||||| |||||| | |||||| ||||||| ||||||||| | ||| ||||||    
T  14574121 acaccgacacgccgacacgagtaataatttgatgaaatgatataattcagtgtaattataggt-tcgtgtcagtgtcggacgccgacgcgtgtc 14574029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 24906373 - 24906320
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    ||||||||||| ||||||  |||||||||||| ||||||| |||||| ||||||    
T  24906373 acactgacacgccaacacagataataatttgaaaaaatgacataattcagtgta 24906320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 388
Target Start/End: Original strand, 12927662 - 12927694
Alignment:
Q  356 taataatttgagaaaatgatataatttagtgta 388  Q
    ||||||||||||||||| |||||||||||||||    
T  12927662 taataatttgagaaaatcatataatttagtgta 12927694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 21049693 - 21049653
Alignment:
Q  333 agacactgacacgtcaacactaataataatttgagaaaatg 373  Q
    ||||||| ||||||| ||||||||||||||||| |||||||    
T  21049693 agacactaacacgtcgacactaataataatttgcgaaaatg 21049653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 21137697 - 21137749
Alignment:
Q  356 taataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggt 408  Q
    ||||||| |||||||||||  ||||| |||| | |||||||||||||||||||    
T  21137697 taataatctgagaaaatgacgtaattcagtgaaatcataggtgtcgtgtcggt 21137749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 473
Target Start/End: Complemental strand, 21576756 - 21576685
Alignment:
Q  401 gtgtcggtgtcggacactgacacgtgtctaacactagggcacccctaatccgtggaatgtacttgcttcatag 473  Q
    |||||| |||||||||| ||||||||||| ||||| || ||| ||||||||| ||| ||| | ||||||||||    
T  21576756 gtgtcgatgtcggacac-gacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 32444751 - 32444799
Alignment:
Q  333 agacactgacacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    |||||||||||||||||||| | ||| |||||||||| |||| ||||||    
T  32444751 agacactgacacgtcaacaccattaacaatttgagaagatgacataatt 32444799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 39205865 - 39205913
Alignment:
Q  333 agacactgacacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    |||||| |||||||| |||||  ||||||||||||||||| ||||||||    
T  39205865 agacacggacacgtcgacactgctaataatttgagaaaatcatataatt 39205913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 321 - 428
Target Start/End: Complemental strand, 14223939 - 14223832
Alignment:
Q  321 cggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactga 420  Q
    |||||| |||| |||||| |||||| | ||||  ||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| ||||| ||    
T  14223939 cggacacgacacagacaccgacacgccgacacagataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacaccga 14223840  T
Q  421 cacgtgtc 428  Q
    ||||||||    
T  14223839 cacgtgtc 14223832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 334 - 427
Target Start/End: Complemental strand, 25652104 - 25652011
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgt 427  Q
    |||||| ||||| ||||||  ||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||| |||||| |||||||||    
T  25652104 gacactaacacgccaacacggataataatttgagaaaatgatataattcagtgtagttataggtgttgtgtcagtgttggacaccgacacgtgt 25652011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 417
Target Start/End: Original strand, 25892466 - 25892529
Alignment:
Q  354 aataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||||||||| |||||||||||    
T  25892466 aataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtcagtgtcggacac 25892529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 473
Target Start/End: Original strand, 25074796 - 25074914
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtctaacactagggcacccctaatccgtg 454  Q
    |||||||||||||||||||| |||||| |||||| ||||||| || ||||||||||| |||||  || ||||||  ||||| || ||| ||||||||| |    
T  25074796 ataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtctgacaccaacgcgtgtccgacactgggacacacctaatccgag 25074895  T
Q  455 gaatgtacttgcttcatag 473  Q
    || ||| | ||||||||||    
T  25074896 gagtgttcgtgcttcatag 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 435
Target Start/End: Original strand, 27903629 - 27903719
Alignment:
Q  345 gtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtctaacact 435  Q
    ||||||||  ||||||||||||||||| ||||||||||| |||| ||||| |||| |||||||||||||| || ||| ||||||| |||||    
T  27903629 gtcaacacagataataatttgagaaaacgatataatttaatgtaatcataagtgttgtgtcggtgtcggataccgacgcgtgtctgacact 27903719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 15864840 - 15864892
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcgg 407  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  15864840 ataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 15864892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 12704709 - 12704647
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    |||||||||||| ||||||| |||||| | |||| ||||||||||||||||||||||||||||    
T  12704709 ataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgtcggacac 12704647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 407
Target Start/End: Complemental strand, 24205154 - 24205041
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcat 393  Q
    |||||||||| | ||| ||||||| | |||||| ||||  |||||||||||| | ||||  |||||||||||||||||||| |||||  |||||| | ||    
T  24205154 atgaagcacggacacagacacggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattat 24205055  T
Q  394 aggtgtcgtgtcgg 407  Q
    | ||||||||||||    
T  24205054 aagtgtcgtgtcgg 24205041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 21367289 - 21367347
Alignment:
Q  360 aatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacact 418  Q
    ||||||||||||||| ||||||||||||| |||| | ||| ||||||||||||||||||    
T  21367289 aatttgagaaaatgacataatttagtgtaatcatggttgttgtgtcggtgtcggacact 21367347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 355 - 413
Target Start/End: Original strand, 52369782 - 52369840
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcgg 413  Q
    |||||||||||||||||| | |||||| | |||| ||||||||||||||||||||||||    
T  52369782 ataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtcgg 52369840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 381
Target Start/End: Complemental strand, 10504989 - 10504929
Alignment:
Q  321 cggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    |||||| ||||||| |||||||||||||||||  |||||||||||| ||||| ||||||||    
T  10504989 cggacacgacataggcactgacacgtcaacaccgataataatttgaaaaaattatataatt 10504929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 427
Target Start/End: Original strand, 25326433 - 25326505
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgt 427  Q
    |||||||||| | ||||| ||||||||||||||| | |||| |||||||| |||||||||||| ||| |||||    
T  25326433 ataataatttaaaaaaataatataatttagtgtaattatagatgtcgtgttggtgtcggacaccgacgcgtgt 25326505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 414
Target Start/End: Complemental strand, 41319383 - 41319303
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcgga 414  Q
    ||||| |||||||| |||| ||||||||||||| ||||||| |||||| | |||| |  || |||||||||||||||||||    
T  41319383 gacacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaattgtatgtgtcgtgtcggtgtcgga 41319303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 474
Target Start/End: Original strand, 21211295 - 21211414
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtctaacactagggcacccctaatccgtg 454  Q
    |||||||||||||||||| | ||| || |||||| | || ||||||||||||||||  ||||| ||| ||||||  ||||| || ||| ||||||||| |    
T  21211295 ataataatttgagaaaattacatagttcagtgtaattatgggtgtcgtgtcggtgttcgacaccgacgcgtgtccgacactgggacactcctaatccgag 21211394  T
Q  455 gaatgtacttgcttcatagt 474  Q
    || |||   |||||||||||    
T  21211395 gagtgtttgtgcttcatagt 21211414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 3730217 - 3730167
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtc 405  Q
    |||||||||||||| ||||| |||||| |||||| ||||||||||||||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgtgtc 3730167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 401
Target Start/End: Original strand, 20691306 - 20691372
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcg 401  Q
    ||||||||||||  | ||| |||||||||||||||||||| |||||| |||||| ||||| ||||||    
T  20691306 acactgacacgtagaaactgataataatttgagaaaatgacataattcagtgtaatcatatgtgtcg 20691372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 417
Target Start/End: Complemental strand, 34307831 - 34307770
Alignment:
Q  356 taataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    ||||||||||||||||| | ||| || |||||| | ||| ||||||||||||||||||||||    
T  34307831 taataatttgagaaaatcacatatttcagtgtaattataagtgtcgtgtcggtgtcggacac 34307770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 402
Target Start/End: Original strand, 1830351 - 1830397
Alignment:
Q  356 taataatttgagaaaatgatataatttagtgtagtcataggtgtcgt 402  Q
    ||||||||| ||||||||| |||||| |||||| |||||||||||||    
T  1830351 taataatttaagaaaatgacataattcagtgtaatcataggtgtcgt 1830397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 8903439 - 8903500
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    |||||| ||||||||||||| ||| ||||||||| | ||||||||||||||| || |||||||    
T  8903439 ataatattttgagaaaatgacata-tttagtgtaattataggtgtcgtgtcgatgccggacac 8903500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 388
Target Start/End: Complemental strand, 10268599 - 10268505
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    |||||||||| |||| |||||||| ||||   | ||||| |||||||||||| | ||||   ||||||||||| ||||| | |||||||||||||    
T  10268599 atgaagcacggatacgaacacggacatcgattacgacatggacactgacacgccgacacagttaataatttgaaaaaatcacataatttagtgta 10268505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 388
Target Start/End: Complemental strand, 10335399 - 10335305
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    |||||||||| |||| |||||||| | |||||| ||||  |||||||||||| | |||| | ||||||||||| ||| | | ||| |||||||||    
T  10335399 atgaagcacggatacgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaagtcacatattttagtgta 10335305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 401
Target Start/End: Complemental strand, 40150623 - 40150577
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcg 401  Q
    ||||||||||||||||||||||||||| | |||| ||||| ||||||    
T  40150623 ataataatttgagaaaatgatataattcaatgtaatcatatgtgtcg 40150577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 18268075 - 18268038
Alignment:
Q  337 actgacacgtcaacactaataataatttgagaaaatga 374  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  18268075 actgacatgtcaacactgataataatttgagaaaatga 18268038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 34189434 - 34189483
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgt 404  Q
    |||||||||||||||||||| ||| || |||||| || ||||||||||||    
T  34189434 ataataatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgtgt 34189483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 427
Target Start/End: Complemental strand, 16789702 - 16789635
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgt 427  Q
    |||||||||||||||||||| |||||| ||||||     ||| ||||||||||| ||||||||  ||||||||    
T  16789702 ataataatttgagaaaatgacataattcagtgta-----aggcgtcgtgtcggtatcggacaccaacacgtgt 16789635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 25365469 - 25365521
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcgg 407  Q
    ||||||||||||||| |||| ||||||  ||||| ||||| ||||||||||||    
T  25365469 ataataatttgagaatatgacataattcggtgtaatcataagtgtcgtgtcgg 25365521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 413
Target Start/End: Complemental strand, 23354749 - 23354646
Alignment:
Q  310 aacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtg 409  Q
    |||||||| | |||||||||||  ||||| |||| |   ||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23354749 aacacggacaccggacatgacacggacaccgacatgctgacacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtg 23354650  T
Q  410 tcgg 413  Q
    ||||    
T  23354649 tcgg 23354646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 25544488 - 25544544
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtc 411  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggtgtc 25544544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 23355047 - 23354989
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcgg 413  Q
    |||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||    
T  23355047 ataataatttgagaaaatgatataatttagtgcaatcataggtgtcatgtcggtgtcgg 23354989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 24011043 - 24011099
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtc 411  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  24011043 ataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcggtgtc 24011099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 434
Target Start/End: Original strand, 37986765 - 37986865
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtctaaca 433  Q
    |||||||||||| | ||||  |||||||||||| ||||||||||| || |||||| |||||||| |||||| |||||||||||| |||  |||||| |||    
T  37986765 gacactgacacgccgacacagataataatttgaaaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgaca 37986864  T
Q  434 c 434  Q
    |    
T  37986865 c 37986865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 11308053 - 11307998
Alignment:
Q  358 ataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcgg 413  Q
    ||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||    
T  11308053 ataatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtcgg 11307998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 355 - 413
Target Start/End: Original strand, 38919213 - 38919271
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcgg 413  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||||||  |||||||    
T  38919213 ataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcgg 38919271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 409
Target Start/End: Complemental strand, 10535811 - 10535757
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtg 409  Q
    |||||||||||||||||||| |||||| |||||| ||||| ||||||||| ||||    
T  10535811 ataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgttggtg 10535757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 19573985 - 19574047
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    |||||||||| ||||||| | |||||| |||||| | ||||||| ||||||||||||||||||    
T  19573985 ataataatttaagaaaataacataattcagtgtaattataggtggcgtgtcggtgtcggacac 19574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 452
Target Start/End: Complemental strand, 13273007 - 13272954
Alignment:
Q  399 tcgtgtcggtgtcggacactgacacgtgtctaacactagggcacccctaatccg 452  Q
    ||||||||||||| ||||| |||||||||| ||||||||| |||||||| ||||    
T  13273007 tcgtgtcggtgtccgacaccgacacgtgtccaacactaggacacccctagtccg 13272954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 12748691 - 12748743
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcgg 407  Q
    |||||||||||||||||||| ||| || |||||| |||||||||| |||||||    
T  12748691 ataataatttgagaaaatgacatagttcagtgtaatcataggtgttgtgtcgg 12748743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 374
Target Start/End: Original strand, 19608389 - 19608429
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatga 374  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  19608389 gacactcacacgtcaacactgataataatttgagaaaatga 19608429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 30527668 - 30527601
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcg 401  Q
    |||||||||||  | |||||  ||||||||||||||||| ||||||||||||||| | ||| ||||||    
T  30527668 gacactgacacacccacactgttaataatttgagaaaatcatataatttagtgtaattatatgtgtcg 30527601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 401
Target Start/End: Original strand, 6249206 - 6249252
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcg 401  Q
    ||||||||||||||||||  ||||||| |||||| ||||||||||||    
T  6249206 ataataatttgagaaaatattataattcagtgtattcataggtgtcg 6249252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 388
Target Start/End: Complemental strand, 20539747 - 20539693
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    |||||||||||||| ||||   ||||||||||| ||||| |||||||||||||||    
T  20539747 gacactgacacgtcgacacagctaataatttgaaaaaatcatataatttagtgta 20539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 25543221 - 25543267
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    ||||||||||||| |||||||||||||||| |  |||||||||||||    
T  25543221 acactgacacgtcgacactaataataatttcaagaaatgatataatt 25543267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 401
Target Start/End: Complemental strand, 34007043 - 34006997
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcg 401  Q
    |||||||||||||||| ||| |||||| |||||| ||||||||||||    
T  34007043 ataataatttgagaaattgacataattcagtgtaatcataggtgtcg 34006997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 43188157 - 43188195
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaat 372  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  43188157 gacactgacacgtcaacaccaataataacttgagaaaat 43188195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 12464923 - 12464882
Alignment:
Q  333 agacactgacacgtcaacactaataataatttgagaaaatga 374  Q
    ||||||||||||| | |||| |||||||||||||||||||||    
T  12464923 agacactgacacgccgacaccaataataatttgagaaaatga 12464882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 31018570 - 31018643
Alignment:
Q  328 gacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcg 401  Q
    ||||| |||||||||||| ||||||   ||||||||| ||||||| | || |||||||||| | ||||||||||    
T  31018570 gacatggacactgacacgccaacaccgctaataatttcagaaaatcacatgatttagtgtaattataggtgtcg 31018643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 426
Target Start/End: Complemental strand, 6698512 - 6698440
Alignment:
Q  355 ataataatttgagaaaa-tgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtg 426  Q
    |||||||||||| |||| ||| |||||| |||||| ||||| ||||||| | ||||||| | |||||||||||    
T  6698512 ataataatttgaaaaaagtgaaataattcagtgtaatcatacgtgtcgtattggtgtcgaatactgacacgtg 6698440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 30563416 - 30563472
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtc 411  Q
    |||||||||||||||||||| |||||| | ||||   |||||||| |||||||||||    
T  30563416 ataataatttgagaaaatgacataattcaatgtaactataggtgttgtgtcggtgtc 30563472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 29812716 - 29812658
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcgg 413  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcgg 29812658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 334 - 434
Target Start/End: Complemental strand, 4017867 - 4017767
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtctaaca 433  Q
    ||||| |||||| | ||||  ||||||||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||| |||  |||||| |||    
T  4017867 gacaccgacacgccgacacggataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgttggtgtcggacaccgacgtgtgtctgaca 4017768  T
Q  434 c 434  Q
    |    
T  4017767 c 4017767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 474
Target Start/End: Complemental strand, 7133327 - 7133211
Alignment:
Q  358 ataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtctaacactagggcacccctaatccgtggaa 457  Q
    ||||||||||||||||| |||||| |||||| |||||||||  ||||||||||||||||| ||| ||||||  ||||| || ||| ||||||| | |||     
T  7133327 ataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcggacaccgacgcgtgtccgacactgggacacacctaatctgaggag 7133228  T
Q  458 tgtacttgcttcatagt 474  Q
     || | |||||||||||    
T  7133227 cgtccgtgcttcatagt 7133211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 23751907 - 23751959
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcgg 407  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  23751907 ataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgtcgg 23751959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 388
Target Start/End: Original strand, 5235932 - 5236026
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    |||||||||  ||||||| ||||| || ||||| |||| ||||||||||||||| ||||   ||||||||| ||||||| |||||||||||||||    
T  5235932 atgaagcacagatacaaatacggacattggacacgacacagacactgacacgtcgacaccgctaataatttaagaaaattatataatttagtgta 5236026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 23930205 - 23930285
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcgga 414  Q
    |||| |||||| || ||||  ||| |||||||||||||||| |||||| |||||| |||||||||| ||||||||||||||    
T  23930205 gacattgacacatcgacacggatagtaatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcgga 23930285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 30516435 - 30516383
Alignment:
Q  329 acatagacactgacacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    |||| |||||||||||||| ||||||| |||||||||||||||||||||||||    
T  30516435 acatggacactgacacgtcgacactaacaataatttgagaaaatgatataatt 30516383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 312 - 412
Target Start/End: Original strand, 43249957 - 43250057
Alignment:
Q  312 cacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtc 411  Q
    |||||| | |||||| ||||  |||||||||||| | ||||  |||||||||||||||||||| |||||  |||||| | ||| ||||||||||||||||    
T  43249957 cacggacaccggacaagacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtc 43250056  T
Q  412 g 412  Q
    |    
T  43250057 g 43250057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 38804607 - 38804545
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    |||||||||| ||||||||| |||||  || ||| ||||||||||||||| ||||||||||||    
T  38804607 ataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgttggtgtcggacac 38804545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 927907 - 927870
Alignment:
Q  337 actgacacgtcaacactaataataatttgagaaaatga 374  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  927907 actgacacgtcgacactaataataatttgagaaaatga 927870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 428
Target Start/End: Complemental strand, 17780136 - 17780063
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtc 428  Q
    |||||||||| ||||||||| ||||||   |||| | ||||||||||||||||||||| |||| ||| ||||||    
T  17780136 ataataatttaagaaaatgacataattctatgtaataataggtgtcgtgtcggtgtcgaacaccgacgcgtgtc 17780063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 22683807 - 22683758
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgt 404  Q
    ||||||||||||||| ||||||||||| |||| | |||||||||||||||    
T  22683807 ataataatttgagaatatgatataattcagtgcaatcataggtgtcgtgt 22683758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 12278834 - 12278894
Alignment:
Q  347 caacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcgg 407  Q
    ||||||| |||||||||| ||||||||| |||||| |||||| | ||| ||||||||||||    
T  12278834 caacactgataataatttaagaaaatgacataattcagtgtaattatatgtgtcgtgtcgg 12278894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 15902795 - 15902875
Alignment:
Q  321 cggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcg 401  Q
    |||||| |||| ||||||||||| | | |||| ||||||||||||| ||||| | ||||||||||||| | ||| ||||||    
T  15902795 cggacacgacacagacactgacatgccgacaccaataataatttgataaaatcacataatttagtgtaattatatgtgtcg 15902875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 374
Target Start/End: Complemental strand, 30177076 - 30177037
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatga 374  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  30177076 acactgacacgtcaacaccagtaataatttgagaaaatga 30177037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 10230125 - 10230063
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    ||||||||||||| |||||| |||||| ||||||   |||| |||||||| ||||||||||||    
T  10230125 ataataatttgaggaaatgacataattcagtgtaagtatagatgtcgtgttggtgtcggacac 10230063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 17285051 - 17285097
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    ||||| ||| |||||||| ||||||||||||||| ||||||||||||    
T  17285051 acactaacaagtcaacaccaataataatttgagagaatgatataatt 17285097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 388
Target Start/End: Original strand, 25481848 - 25481942
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    |||||||||| ||||| ||||||| ||||||||  |||| |||| ||||||| | ||||   ||||||||||| ||||| | |||||| ||||||    
T  25481848 atgaagcacggatacagacacggacatcggacacaacatggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgta 25481942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 371
Target Start/End: Complemental strand, 26329495 - 26329418
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaa 371  Q
    |||||||||||||||| ||||||| |  ||||| |||| ||||||||||||| | |||    ||||||||||||||||    
T  26329495 atgaagcacgaatacagacacggacactggacacgacacagacactgacacgccgacatcgttaataatttgagaaaa 26329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 401
Target Start/End: Complemental strand, 21141096 - 21140988
Alignment:
Q  293 aatgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtca 392  Q
    ||||||||||| ||||  ||||||| | || ||| ||||  ||| | |||||||| |||| | ||||||||| ||||||| |||||||| |||||  | |    
T  21141096 aatgaagcacggatacggacacggacaccgtacacgacacggacgccgacacgtcgacaccactaataatttaagaaaatcatataattcagtgtgatta 21140997  T
Q  393 taggtgtcg 401  Q
    |||||||||    
T  21140996 taggtgtcg 21140988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 23128719 - 23128667
Alignment:
Q  349 acactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcg 401  Q
    |||| ||||||||||||||||||  |||||||| |||||| ||||| ||||||    
T  23128719 acaccaataataatttgagaaaaccatataattcagtgtaatcatatgtgtcg 23128667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 390
Target Start/End: Complemental strand, 29763287 - 29763191
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagt 390  Q
    |||||| ||| |||| ||||| || | || ||| |||||||||||||||||  |||||| | | ||||||||| ||||| | |||||| ||||||||    
T  29763287 atgaagtacggatacgaacacagacaccgaacacgacatagacactgacacaccaacacaacttataatttgaaaaaatcacataattaagtgtagt 29763191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 46644745 - 46644701
Alignment:
Q  349 acactaataataatttgagaaaatgatataatttagtgtagtcat 393  Q
    |||| ||||||||||||| ||||| ||||||||||||||| ||||    
T  46644745 acaccaataataatttgaaaaaattatataatttagtgtaatcat 46644701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 434
Target Start/End: Complemental strand, 3144704 - 3144625
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtctaacac 434  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||  || |||||| |||||    
T  3144704 ataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcagacaccaacgcgtgtccaacac 3144625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 428
Target Start/End: Original strand, 24343453 - 24343587
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcat 393  Q
    |||||||||| | ||| ||||||| | |||||| ||||  ||| | |||||| | ||||  |||||||||||||||||| | |||||| |||||| | ||    
T  24343453 atgaagcacggacacagacacggacaccggacacgacacggacgccgacacgccgacacggataataatttgagaaaattacataattcagtgtaattat 24343552  T
Q  394 aggtgtcgtgtcggtgtcggacactgacacgtgtc 428  Q
    |||||||||||||||||| ||||| ||| ||||||    
T  24343553 aggtgtcgtgtcggtgtccgacaccgacgcgtgtc 24343587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 20743350 - 20743273
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcg 412  Q
    ||||||||||| | ||||  |||||||||||||||||||| |||||| |||||| |||||||||| ||||||||||||    
T  20743350 acactgacacgccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcg 20743273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 428
Target Start/End: Original strand, 8820395 - 8820488
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtc 428  Q
    |||||||||||||||||   |||||||||||| ||||| | |||||| | || ||||||| |||||||||||||||| ||| || |||||||||    
T  8820395 acactgacacgtcaacatcgataataatttgataaaatcacataattcaatggagtcatatgtgtcgtgtcggtgtctgacgctaacacgtgtc 8820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 23386166 - 23386215
Alignment:
Q  368 aaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  23386166 aaaatgatataatttagtgtaatcataggtgtcatgtcggtgtcggacac 23386215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 31243606 - 31243545
Alignment:
Q  349 acactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgt 410  Q
    ||||| |||||||||||||||||||| |||||| |||||| ||||||||||| |||||||||    
T  31243606 acacttataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgt 31243545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 6273953 - 6274009
Alignment:
Q  357 aataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcgg 413  Q
    |||||||||||||||||||||||||||||||| | ||||  ||||||||||||||||    
T  6273953 aataatttgagaaaatgatataatttagtgtaattatagtcgtcgtgtcggtgtcgg 6274009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 49659573 - 49659533
Alignment:
Q  357 aataatttgagaaaatgatataatttagtgtagtcataggt 397  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  49659573 aataatttgagaaaatgatataatttagtgtaatcataggt 49659533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 473
Target Start/End: Complemental strand, 4136344 - 4136267
Alignment:
Q  395 ggtgtcgtgtcggtgtcggacactgacacgtgtctaacactagggcacccctaatccgtggaatgtacttgcttcatag 473  Q
    |||||||||||||| ||||||||||||| |||||| |||||||| ||| | ||||| |  || ||||||||||||||||    
T  4136344 ggtgtcgtgtcggt-tcggacactgacatgtgtctgacactaggacacacttaatctgaagagtgtacttgcttcatag 4136267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 473
Target Start/End: Complemental strand, 53381644 - 53381530
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtctaacactagggcacccctaatccgtg 454  Q
    |||||||||| |||||||||    ||| |||||| | ||||| |||||||||||||||||||||||| ||| ||  ||||  || ||| ||||||||| |    
T  53381644 ataataatttaagaaaatga----attcagtgtaattataggcgtcgtgtcggtgtcggacactgacgcgtatccgacaccgggacacacctaatccgag 53381549  T
Q  455 gaatgtacttgcttcatag 473  Q
    || ||| | ||||||||||    
T  53381548 gagtgtccgtgcttcatag 53381530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 388
Target Start/End: Complemental strand, 21539945 - 21539886
Alignment:
Q  329 acatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    ||||||||||||||| | | |||| | ||||||||| ||||||| |||||||||||||||    
T  21539945 acatagacactgacatgccgacaccattaataatttaagaaaatcatataatttagtgta 21539886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 428
Target Start/End: Complemental strand, 944717 - 944647
Alignment:
Q  358 ataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacactgacacgtgtc 428  Q
    ||||||||||| |||||   ||||||||||| | |||||||||||||| |||||| |||| ||| ||||||    
T  944717 ataatttgagataatgacgcaatttagtgtaattataggtgtcgtgtcagtgtcgaacacagacgcgtgtc 944647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 9299133 - 9299083
Alignment:
Q  328 gacatagacactgacacgtcaacactaataataatttgagaaaatgatata 378  Q
    |||||||||||||||||| ||||| |  ||||||||||||||||| |||||    
T  9299133 gacatagacactgacacgccaacattgctaataatttgagaaaataatata 9299083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 412
Target Start/End: Original strand, 17876157 - 17876219
Alignment:
Q  350 cactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcg 412  Q
    |||| ||| |||||| ||||||||| ||||||||||||| ||||| ||| |||||| ||||||    
T  17876157 cactgatactaattttagaaaatgacataatttagtgtaatcatatgtgccgtgtcagtgtcg 17876219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 388
Target Start/End: Original strand, 36635310 - 36635364
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    |||||||||||| |||||| | ||||||||||||||||| | |||||| ||||||    
T  36635310 gacactgacacgccaacaccactaataatttgagaaaatcacataattcagtgta 36635364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 50848361 - 50848311
Alignment:
Q  349 acactaataataatttgagaaaatgatataatttagtgtagtcataggtgt 399  Q
    |||| ||||||||||||| |||||||||||||| |||||| || |||||||    
T  50848361 acaccaataataatttgaaaaaatgatataattcagtgtaatcgtaggtgt 50848311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 34515946 - 34515881
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtc 400  Q
    ||||||||||||| ||||  |||||||||  ||||||||| |||||| ||||||  ||||||||||    
T  34515946 acactgacacgtcgacacggataataattcaagaaaatgacataattcagtgtaaacataggtgtc 34515881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 399
Target Start/End: Complemental strand, 55941076 - 55941011
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgt 399  Q
    |||||| | |||||||||| ||||||||||| ||||||| | |||||||||| || ||||| ||||    
T  55941076 gacacttatacgtcaacaccaataataatttaagaaaattacataatttagtataatcatatgtgt 55941011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 21945467 - 21945543
Alignment:
Q  312 cacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    |||||| | ||||||||||| ||||||||||| | | ||||   ||||||||||| ||||||| |||||| ||||||    
T  21945467 cacggacaccggacatgacacagacactgacatgccgacacagctaataatttgaaaaaatgacataattcagtgta 21945543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 25216941 - 25216905
Alignment:
Q  336 cactgacacgtcaacactaataataatttgagaaaat 372  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  25216941 cactgacacgccaacactaataataatttgaggaaat 25216905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 39507171 - 39507127
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgt 399  Q
    ||||||||||  ||||||||||||||| |||||| ||||||||||    
T  39507171 ataataatttatgaaaatgatataattaagtgtaatcataggtgt 39507127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 47191045 - 47191001
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgt 399  Q
    ||||||||||| |||||||| ||||||||||||| || |||||||    
T  47191045 ataataatttgcgaaaatgacataatttagtgtaatcctaggtgt 47191001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 42004999 - 42004937
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    |||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  42004999 ataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggtgtcggacac 42004937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 417
Target Start/End: Complemental strand, 6936472 - 6936390
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    ||||| |||| |||||||  |||||||| ||||||||||| |||||| |||||| |||||||||||||||| |||||||||||    
T  6936472 acactaacacatcaacacggataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgtcggacac 6936390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 405
Target Start/End: Complemental strand, 22794174 - 22794080
Alignment:
Q  311 acacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtc 405  Q
    ||||||| | |||| | |||||||||||||||||||||||||  |||||||||||| ||||||| |||||  |||||| | ||||||||||||||    
T  22794174 acacggataccggatacgacatagacactgacacgtcaacacggataataatttgaaaaaatgacataatacagtgtaattataggtgtcgtgtc 22794080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 294 - 388
Target Start/End: Complemental strand, 37055968 - 37055875
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    |||||||||| |||||| |||| | ||||||||||||| ||||||||| || || | |||  ||||||||||||||||| | |||||||||||||    
T  37055968 atgaagcacggatacaa-cacgaacatcggacatgacacagacactgatacatcgatactgctaataatttgagaaaattacataatttagtgta 37055875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 6573999 - 6574047
Alignment:
Q  358 ataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcg 406  Q
    ||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  6573999 ataatttgagacaatgatataatttagtgtaatcataggtgttgtgtcg 6574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 40747825 - 40747763
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    |||||||||||||||||||| |||||| | |||| | ||||||||| ||| ||||||||||||    
T  40747825 ataataatttgagaaaatgacataattcaatgtaattataggtgtcatgttggtgtcggacac 40747763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 388
Target Start/End: Complemental strand, 41017477 - 41017423
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    |||| |||||||||||| ||| ||||||||||||||||||| |||||||| ||||    
T  41017477 gacattgacacgtcaaccctagtaataatttgagaaaatgacataatttaatgta 41017423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 388
Target Start/End: Original strand, 23440017 - 23440050
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgta 388  Q
    ||||||||||||||||||||||||||||||||||    
T  23440017 ataataatttgagaaaatgatataatttagtgta 23440050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 36878441 - 36878514
Alignment:
Q  328 gacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcg 401  Q
    |||||||||||||||||| | ||||   ||||||||||||||||| | |||||| |||||| | ||||||||||    
T  36878441 gacatagacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtcg 36878514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 43328454 - 43328507
Alignment:
Q  335 acactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    ||||||||||||  ||||| |||||||||||||||||||| |||||||| ||||    
T  43328454 acactgacacgttgacacttataataatttgagaaaatgaaataatttaatgta 43328507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 609571 - 609484
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    |||||||||| ||||  |||| || |||||||| |||||  ||||||||||| | |||| | ||||||||||||||||| | ||||||    
T  609571 atgaagcacgtatacggacacagacatcggacacgacatcaacactgacacgccgacaccactaataatttgagaaaattacataatt 609484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 473
Target Start/End: Original strand, 32899931 - 32900010
Alignment:
Q  394 aggtgtcgtgtcggtgtcggacactgacacgtgtctaacactagggcacccctaatccgtggaatgtacttgcttcatag 473  Q
    |||||| ||||||||||||||||| ||| | ||||  ||||  || ||||||||||||| ||| ||| ||||||||||||    
T  32899931 aggtgttgtgtcggtgtcggacaccgacgcatgtcggacaccgggacacccctaatccgaggattgtccttgcttcatag 32900010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 39101234 - 39101179
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgt 410  Q
    |||||||||||||||||| | |||||| |||||| | ||||||||||| |||||||    
T  39101234 ataataatttgagaaaataacataattaagtgtaattataggtgtcgtttcggtgt 39101179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 401
Target Start/End: Complemental strand, 40285767 - 40285660
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcat 393  Q
    |||||||||| |||| |||| ||||| | | || || || |||||||||||  ||||||   |||||||||||||||||   |||||| |||||||||||    
T  40285767 atgaagcacggatacgaacatggaaaccaggcacgagatggacactgacacaccaacaccgctaataatttgagaaaatcgcataattcagtgtagtcat 40285668  T
Q  394 aggtgtcg 401  Q
    | ||||||    
T  40285667 atgtgtcg 40285660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 11634176 - 11634118
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcgg 413  Q
    |||||||||||||||||  | |||||||| |||| |||||||||||||||  |||||||    
T  11634176 ataataatttgagaaaacaacataatttaatgtaatcataggtgtcgtgtgagtgtcgg 11634118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 3921659 - 3921700
Alignment:
Q  340 gacacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    ||||||||||||  ||||||||||||||||||||| ||||||    
T  3921659 gacacgtcaacatcaataataatttgagaaaatgacataatt 3921700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 8842802 - 8842733
Alignment:
Q  319 atcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    ||||||||||||| ||||||||||||| |  ||| | || |||||||||||||  |||||||||| ||||    
T  8842802 atcggacatgacacagacactgacacgccggcaccactagtaatttgagaaaaacatataatttaatgta 8842733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 381
Target Start/End: Original strand, 2445859 - 2445903
Alignment:
Q  337 actgacacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    |||||||| ||||||| ||| ||||||||||||||||| ||||||    
T  2445859 actgacacttcaacaccaatgataatttgagaaaatgacataatt 2445903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 25452259 - 25452183
Alignment:
Q  296 gaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaat 372  Q
    |||||||| ||| | |||| || || |||||||||| |||||| |||| | |||||||  |||||||||||||||||    
T  25452259 gaagcacggatatagacacagacattggacatgacaaagacaccgacatgccaacactgctaataatttgagaaaat 25452183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 39130825 - 39130773
Alignment:
Q  349 acactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcg 401  Q
    |||||| ||||||||| ||||||| ||||||||||||||| | ||| ||||||    
T  39130825 acactattaataattttagaaaattatataatttagtgtaattatatgtgtcg 39130773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 48415764 - 48415728
Alignment:
Q  368 aaaatgatataatttagtgtagtcataggtgtcgtgt 404  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  48415764 aaaatgatataatttagtgtaatcatagatgtcgtgt 48415728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 13845235 - 13845299
Alignment:
Q  349 acactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcgg 413  Q
    |||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||    
T  13845235 acacaaataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtctgtgtcgg 13845299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 39820436 - 39820488
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcgg 407  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 39820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 35431192 - 35431140
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcgg 407  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  35431192 ataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 35431140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 13009545 - 13009490
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgt 410  Q
    |||||||||||||||||  ||||||||||||||| ||||| |||||||||||||||    
T  13009545 ataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcggtgt 13009490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 417
Target Start/End: Complemental strand, 26915313 - 26915230
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    ||||| |||||||| ||||  |||| | ||||||||||||| |||||||| |||| ||| | ||||||||||||||||||||||    
T  26915313 gacacggacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcgtgtcggtgtcggacac 26915230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 926901 - 926823
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaat 372  Q
    |||||||||| |||| |||||||| | |||||| ||||  |||||||||||| |||||||  |||||||||||||||||    
T  926901 atgaagcacggatacgaacacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaat 926823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 40063952 - 40064014
Alignment:
Q  349 acactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtc 411  Q
    |||| ||||||||||||||||||||| |||||| | |||| ||||||| ||||||||||||||    
T  40063952 acaccaataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcggtgtc 40064014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 334 - 412
Target Start/End: Original strand, 44067502 - 44067580
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcg 412  Q
    |||||||||||| | ||||  |||||||||||||||||||| |||||  |||||| | ||| |||||||||||||||||    
T  44067502 gacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcg 44067580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 1676719 - 1676771
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcgg 407  Q
    ||||||||||| |||||||| ||| ||||||||| ||||||||||||||||||    
T  1676719 ataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 1676771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 417
Target Start/End: Original strand, 3658133 - 3658216
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    ||||| ||||| || ||||  |||||||||||||||||| || || || |||||| ||||||||||||||| | ||||||||||    
T  3658133 gacaccgacacatcgacacggataataatttgagaaaataatgtagttcagtgtaatcataggtgtcgtgttgatgtcggacac 3658216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 14227210 - 14227255
Alignment:
Q  336 cactgacacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    ||||||||||||||||| ||||||||||||||||||| | ||||||    
T  14227210 cactgacacgtcaacaccaataataatttgagaaaataacataatt 14227255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 388
Target Start/End: Complemental strand, 4673519 - 4673444
Alignment:
Q  313 acggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    ||||| |||||||| |||| ||||||||||||| | ||||  |||||||||||| ||||| ||| |||| ||||||    
T  4673519 acggacatcggacacgacacagacactgacacgccgacacagataataatttgaaaaaatcataaaattcagtgta 4673444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 10170472 - 10170421
Alignment:
Q  321 cggacatgacatagacactgacacgtcaacactaataataatttgagaaaat 372  Q
    |||||| || ||||||| || ||||||||||| |||||||||||||||||||    
T  10170472 cggacacgatatagacattggcacgtcaacaccaataataatttgagaaaat 10170421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 381
Target Start/End: Original strand, 11815815 - 11815862
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    |||||||||||||  |||| |||||||||||||||||||| |||||||    
T  11815815 gacactgacacgttgacaccaataataatttgagaaaatgttataatt 11815862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 28883931 - 28883880
Alignment:
Q  354 aataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtc 405  Q
    ||||||||||||||||||||| |||||| |||| | ||||||||||| ||||    
T  28883931 aataataatttgagaaaatgacataattcagtggaatcataggtgtcttgtc 28883880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 12559157 - 12559119
Alignment:
Q  356 taataatttgagaaaatgatataatttagtgtagtcata 394  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  12559157 taataatttgagaaaatgatataattcagtgtaatcata 12559119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 14513241 - 14513164
Alignment:
Q  340 gacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcggacac 417  Q
    |||||| |||||  ||||||||||||||||||| | |||||| || ||| |||||| | | ||||||||||| |||||    
T  14513241 gacacgccaacaaaaataataatttgagaaaattacataattcagcgtaatcatagatttggtgtcggtgtcagacac 14513164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 2648314 - 2648274
Alignment:
Q  341 acacgtcaacactaataataatttgagaaaatgatataatt 381  Q
    |||||||||||| ||||||||||||||||||| | ||||||    
T  2648314 acacgtcaacaccaataataatttgagaaaataacataatt 2648274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 34201104 - 34201072
Alignment:
Q  349 acactaataataatttgagaaaatgatataatt 381  Q
    |||||||||||||||||||||||||| ||||||    
T  34201104 acactaataataatttgagaaaatgacataatt 34201072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 1956 - 2008
Alignment:
Q  355 ataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcgg 407  Q
    ||||||||||| |||||||| ||| ||||||||| ||||||||||||||||||    
T  1956 ataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 2008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 8126 - 8047
Alignment:
Q  334 gacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcataggtgtcgtgtcggtgtcgg 413  Q
    ||||| |||||||| | ||  |||||||||||||||||||| |||||| ||||||  ||||||| |||||||||| ||||    
T  8126 gacaccgacacgtcgatacggataataatttgagaaaatgacataattcagtgtaaacataggtatcgtgtcggtttcgg 8047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 90817 - 90883
Alignment:
Q  322 ggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgta 388  Q
    ||||| |||| ||||||||||||  |||||| | ||||||||||||||||| |||||||| ||||||    
T  90817 ggacacgacacagacactgacacaccaacaccattaataatttgagaaaatcatataattcagtgta 90883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 412
Target Start/End: Complemental strand, 225381 - 225263
Alignment:
Q  294 atgaagcacgaatacaaacacggaaatcggacatgacatagacactgacacgtcaacactaataataatttgagaaaatgatataatttagtgtagtcat 393  Q
    ||||| |||| | ||| ||||||| | |||||| ||||  |||||||||||| | ||||  |||||||||||||||||||| |||||  | |||| | ||    
T  225381 atgaaacacggacacagacacggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaatgacataatacaatgtaattat 225282  T
Q  394 aggtgtcgtgtcggtgtcg 412  Q
    | ||||||||| |||||||    
T  225281 aagtgtcgtgttggtgtcg 225263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 56932 - 56974
Alignment:
Q  358 ataatttgagaaaatgatataatttagtgtagtcataggtgtc 400  Q
    |||||||||||||||||||||||| |||||| ||||| |||||    
T  56932 ataatttgagaaaatgatataattcagtgtaatcataagtgtc 56974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 400
Target Start/End: Complemental strand, 68293 - 68249
Alignment:
Q  356 taataatttgagaaaatgatataatttagtgtagtcataggtgtc 400  Q
    ||||||||||||||||| |||||||||||| || | |||||||||    
T  68293 taataatttgagaaaatcatataatttagtataattataggtgtc 68249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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