View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_high_12 (Length: 420)
Name: NF7020_high_12
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 29 - 412
Target Start/End: Complemental strand, 45654603 - 45654223
Alignment:
| Q |
29 |
atatttgaacatcatattattctctatattgttaatatggtatcagagttaaggatagcaatatgaaaattgtattcagagccatgctagccatgagggt |
128 |
Q |
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| T |
45654603 |
atatttgaacatcatattattctctatattgttaatatggtatcagagttaaggatagcaacgtgaaaattgtattcagagccatgctagccatgagggt |
45654504 |
T |
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| Q |
129 |
cggtattaaaagnnnnnnnaaatttgtttagggtcctacattacttagattctcaaactattaagtgtgtaaatttgttaggacactcttaatgtccttt |
228 |
Q |
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| T |
45654503 |
cggtattaaatttttttttaa-tttgtttagagtcctacattacttaggttctcaaactattaagtgtgtaaatgtgttaggacactcttaatgtccttt |
45654405 |
T |
|
| Q |
229 |
gatctctagcttttgggatgatattcaactcatttagcatatagtatcaaaactaacttctctttgttggttattatgtttgannnnnnnnnnnnctttc |
328 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
45654404 |
gatctttagcttttgggatgatattcaactcatttagcatatagtatcaaaactaacttctctttattggttattatgtttga--ttttttttttctttc |
45654307 |
T |
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| Q |
329 |
tatttttcattgattcttctttgagctctctttgttggaatgtttgattcctctttttgattgccttattctctctgctactcc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
45654306 |
tatttttcattgattcttctttgagctctctttgttggaatgtttgattcctctttttgattgccttattctctttgttactcc |
45654223 |
T |
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