View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_high_15 (Length: 376)
Name: NF7020_high_15
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 31756511 - 31756166
Alignment:
| Q |
19 |
ggtggttcaattgtttgtggtttgaattcaactggttttttggtttgcaaaggaagtaacagttctggtcaacttgatgttccacaaggtggtgcttttg |
118 |
Q |
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| T |
31756511 |
ggtggttcaaatgtttgtggtttgaattcaactggttttttggtttgcaaaggaagtaacagttctggtcaacttgatgttccacaaggtggtgcttttg |
31756412 |
T |
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| Q |
119 |
agtatggtgatatagcacttggtgatgaacatggttgtgctgttcgaagattgaatggttctgttgtttgttggggtggaaaaggagaattttctgcgga |
218 |
Q |
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| T |
31756411 |
agtatggtgatatagcacttggtgatgaacatggttgtgctgttcgaagattgaatggttctgttgtttgttggggtggaaaaggagaattttctgcgga |
31756312 |
T |
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| Q |
219 |
ttctattgaaggggtttcttttgagttaattgtttctggttctaattttacttgtggtttgacaacaaccaatttttctgttgtttgttggggacctggt |
318 |
Q |
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| T |
31756311 |
ttctattgaaggggtttcttttgagttaattgtttctggttctaattttacttgtggtttgacaacaaccaatttttctgttgtttgttggggacctggt |
31756212 |
T |
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| Q |
319 |
tggtctaatggatcaaatggttctgaatctattcttcctttgtctc |
364 |
Q |
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| T |
31756211 |
tggtctaatggatcaaatggttctgaatctattcttcctttgtctc |
31756166 |
T |
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Back To:
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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 35559513 - 35559424
Alignment:
| Q |
232 |
gtttcttttgagttaattgtttctggttctaattttacttgtggtttgacaacaaccaatttttctgttgtttgttggggacctggttgg |
321 |
Q |
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| T |
35559513 |
gtttcttttgaggttattgtttctgcttccaattttacttgtggattgacaacaaacaatttttctgttgtttgttggggtcctagttgg |
35559424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 35559601 - 35559548
Alignment:
| Q |
144 |
tgaacatggttgtgctgttcgaagattgaatggttctgttgtttgttggggtgg |
197 |
Q |
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| T |
35559601 |
tgaacatagttgtgctattagaagatctaatggttctgttgtttgttggggtgg |
35559548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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