View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_high_16 (Length: 341)
Name: NF7020_high_16
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 7461364 - 7461031
Alignment:
| Q |
1 |
aaaaaacatattaacatagtttaataaaattgtatctagttgcaataataaattaaataagaagaggaagaaagag----accttggtttcaaggagaca |
96 |
Q |
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| T |
7461364 |
aaaaaacatattaacatagtttaataaaattgtatctagttgcaataataaattaaataagaagaggaagaaagaggtataccttggtttcaaggagaca |
7461265 |
T |
|
| Q |
97 |
cttctcaagaatggtggattcatgaannnnnnnaagacttaagtacccttcttcaagtttcttgttcttccacctagcccttcgattctggaaccatact |
196 |
Q |
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| T |
7461264 |
cttctcaagaatggtggattcatgattttttttaagactgaagtactcttcttcaagtttcttgttcttccacctagcccttcgattctggaaccatact |
7461165 |
T |
|
| Q |
197 |
gcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactcaagtttatgttcatttccaaagttttcttccaaaatattca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7461164 |
gcaacttgtcttggatctaaaccaagctccattgcaagcctatccttcttctctgactcaagtttatgttcatttccaaagttttcttccaaaatattca |
7461065 |
T |
|
| Q |
297 |
cttgttcatcactcaatttcctctttttgttcat |
330 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
7461064 |
cttgttcatcactcaatttcctctttttgttcat |
7461031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 51 - 330
Target Start/End: Complemental strand, 7446370 - 7446087
Alignment:
| Q |
51 |
aattaaataagaagaggaagaaagag----accttggtttcaaggagacacttctcaagaatggtggattcatgaannnnnnnaagacttaagtaccctt |
146 |
Q |
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||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| ||| |
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| T |
7446370 |
aattaaataagaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactctt |
7446271 |
T |
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| Q |
147 |
cttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttctt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7446270 |
cttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttctt |
7446171 |
T |
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| Q |
247 |
ctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcat |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7446170 |
ctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcat |
7446087 |
T |
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