View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_high_17 (Length: 335)
Name: NF7020_high_17
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 26417958 - 26417642
Alignment:
| Q |
1 |
ttcatggcgggtttctgtgagtgagggaatgtgttcacaatagttttgatgtggctaaaggggatgtacttgggttaatgttatgtaatgtagaagatta |
100 |
Q |
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| T |
26417958 |
ttcatggcgggtttctgtgagtgagggaatgtgttcacaatagttttgatgtggctaaaggggatgtacttgggttaatgttatgtaatgtagaagatta |
26417859 |
T |
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| Q |
101 |
gtggattatgggttgaatgagaatgccgaaggagagttactggcttcaagaagatgggtactagttagtttctggttatggtttggtttttggattacgg |
200 |
Q |
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| T |
26417858 |
gtggattatgggttgaatgagaatgccgaaggagagttactggcttcaagaagatgggtactagttagtttctggttgtggtttggtttttggattacgg |
26417759 |
T |
|
| Q |
201 |
atgatggtggaggtagtgactatggaggtctaatgttggtctgctgtgatggtttatggtgtttcctttttacggatattttgacgatgagtgtctgatg |
300 |
Q |
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| T |
26417758 |
atgatggtggaggtagtgactatggaggtctaatgttggtctgctgtgatggtttatggtgtttcctttttacggatattttgaagatgagtgtctgatg |
26417659 |
T |
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| Q |
301 |
tagagaatgggttttct |
317 |
Q |
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| T |
26417658 |
tagagaatgggttttct |
26417642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 51 - 317
Target Start/End: Original strand, 27983070 - 27983321
Alignment:
| Q |
51 |
gtggctaaaggggatgtacttgggttaatgttatgtaatgtagaagattagtggattatgggttgaatgagaatgccgaaggagagttactggcttcaag |
150 |
Q |
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| T |
27983070 |
gtggctaaaggtggtgtactttggttaatgttatgtaatgcagaagagtagtggattatggtgtgaatgagaatgttgaaggagagttactgccttcaag |
27983169 |
T |
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| Q |
151 |
aagatgggtactagttagtttctggttatggtttggtttttggattacggatgatggtggaggtagtgactatggaggtctaatgttggtctgctgtgat |
250 |
Q |
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| T |
27983170 |
aggaagggtactagttagtttctggttgtggtttggtttctcgatgaagggtgatgg---------------tggaggtctaaggttggtttgctgtgat |
27983254 |
T |
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| Q |
251 |
ggtttatggtgtttcctttttacggatattttgacgatgagtgtctgatgtagagaatgggttttct |
317 |
Q |
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| T |
27983255 |
ggtttatggtgtttccattttagggctattttgatgataagtgtctgatgtagagaatgggttttct |
27983321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 51 - 317
Target Start/End: Original strand, 28069600 - 28069851
Alignment:
| Q |
51 |
gtggctaaaggggatgtacttgggttaatgttatgtaatgtagaagattagtggattatgggttgaatgagaatgccgaaggagagttactggcttcaag |
150 |
Q |
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| T |
28069600 |
gtggctaaaggtggtgtactttggttaatgttatgtaatgcagaagagtagtggattatggtgtgaatgagaatgttgaaggagagttactgccttcaag |
28069699 |
T |
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| Q |
151 |
aagatgggtactagttagtttctggttatggtttggtttttggattacggatgatggtggaggtagtgactatggaggtctaatgttggtctgctgtgat |
250 |
Q |
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| T |
28069700 |
aggaagggtactagttagtttctggttgtggtttggtttctcgatgaagggtgatgg---------------tggaggtctaaggttggtttgctgtgat |
28069784 |
T |
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| Q |
251 |
ggtttatggtgtttcctttttacggatattttgacgatgagtgtctgatgtagagaatgggttttct |
317 |
Q |
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|||||||||||||||| ||||| || |||||||| ||| |||||||||||||||||||||||||||| |
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| T |
28069785 |
ggtttatggtgtttccattttagggctattttgatgataagtgtctgatgtagagaatgggttttct |
28069851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27982994 - 27983047
Alignment:
| Q |
1 |
ttcatggcgggtttctgtgagtgagggaatgtgttcacaatagttttgatgtgg |
54 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27982994 |
ttcatggcgggtttctgcgagtgagggaatgtgttcacaatagttttgatgtgg |
27983047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28069524 - 28069577
Alignment:
| Q |
1 |
ttcatggcgggtttctgtgagtgagggaatgtgttcacaatagttttgatgtgg |
54 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28069524 |
ttcatggcgggtttctgcgagtgagggaatgtgttcacaatagttttgatgtgg |
28069577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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