View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7020_high_18 (Length: 317)

Name: NF7020_high_18
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7020_high_18
NF7020_high_18
[»] chr1 (6 HSPs)
chr1 (19-298)||(37493147-37493422)
chr1 (142-274)||(29827655-29827788)
chr1 (189-274)||(25175304-25175390)
chr1 (200-273)||(15965201-15965274)
chr1 (155-252)||(31017150-31017246)
chr1 (153-251)||(19152545-19152640)
[»] chr7 (3 HSPs)
chr7 (134-259)||(39023477-39023600)
chr7 (129-272)||(28574472-28574615)
chr7 (153-275)||(45669876-45669999)
[»] chr5 (4 HSPs)
chr5 (103-256)||(35106587-35106736)
chr5 (153-274)||(7155171-7155293)
chr5 (153-256)||(4261319-4261420)
chr5 (140-275)||(8787617-8787750)
[»] chr4 (2 HSPs)
chr4 (153-259)||(43793171-43793277)
chr4 (144-256)||(42507238-42507351)
[»] chr8 (2 HSPs)
chr8 (148-256)||(16611089-16611197)
chr8 (137-256)||(8164468-8164587)
[»] chr2 (1 HSPs)
chr2 (177-272)||(3272453-3272549)
[»] chr6 (2 HSPs)
chr6 (181-227)||(12748401-12748447)
chr6 (142-175)||(12748169-12748202)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 37493422 - 37493147
Alignment:
Q  19 atcctgacccttacatatatacattatgcattgttctaaccaaccaactaagttaaactcacgaagacgagatatatttgtttagtcacaaacataaata 118  Q
    |||| |||| ||||||||||||||||||||||||||    |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||    
T  37493422 atcccgacctttacatatatacattatgcattgttc----caaccaactaagttaagctcacgaggacgagatatacttgtttagtcacaaacataaata 37493327  T
Q  119 taaatcgttgtttaggcgcgcatacataaaagggaaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgtttt 218  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37493326 taaatcgtcgtttaggagcgcatacataaaagggaaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgtttt 37493227  T
Q  219 aatgaatgtcagcctaaatgatattgatttggtgttgtatcatataaatatttctcactagtactagtttaggggggttt 298  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37493226 aatgaatgtgtgcctaaatgatattgatttggtgttgtatcatataaatatttctcactagtactagtttaggggggttt 37493147  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 142 - 274
Target Start/End: Complemental strand, 29827788 - 29827655
Alignment:
Q  142 acataaaagggaaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtcagcctaaatgata 241  Q
    ||||||||| |||||||||| |||||||| ||||  ||||||||||| ||||||||| ||||||| |||||| |||||||||||||  ||| |||| ||     
T  29827788 acataaaagagaaaagtatgaaagagaaatgaattgaataatatatccttttgaaataattaaattatagatattttaatgaatgtgtgccaaaataatt 29827689  T
Q  242 ttgatttggtgttgtat-catataaatatttctc 274  Q
    || ||||||||| || | ||||||| ||||||||    
T  29827688 ttaatttggtgtcgtgtccatataagtatttctc 29827655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 25175390 - 25175304
Alignment:
Q  189 tttttgaaattattaaatgatagatgttttaatgaatgtcagcctaaatgatattgatttggtgttgtat-catataaatatttctc 274  Q
    |||||||||| |||||||||||||| |||||||||   |  ||||||||||| ||||||||||||||| | |||| |||||||||||    
T  25175390 tttttgaaataattaaatgatagatattttaatgaggatgtgcctaaatgattttgatttggtgttgtgtccatacaaatatttctc 25175304  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 15965274 - 15965201
Alignment:
Q  200 attaaatgatagatgttttaatgaatgtcagcctaaatgatattgatttggtgttgtatc-atataaatatttct 273  Q
    ||||||||||| || |||||||||||||  | ||||||||| ||||||||||||||| || ||||||||||||||    
T  15965274 attaaatgataaatattttaatgaatgtgtgtctaaatgat-ttgatttggtgttgtgtctatataaatatttct 15965201  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 31017150 - 31017246
Alignment:
Q  155 aagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtcagcctaaatgatattgatttggtg 252  Q
    ||||||| ||| |||| |||| ||||||||||| ||||| || | |||||||||||||| ||||||||| |||   ||||||| || |||||||||||    
T  31017150 aagtatgaaagtgaaaagaattaaataatatatattttt-aattaattaaatgatagatattttaatgagtgtgtacctaaataattttgatttggtg 31017246  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 19152545 - 19152640
Alignment:
Q  153 aaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtcagcctaaatgatattgatttggt 251  Q
    |||| |||| |||||||| |||| ||||||  ||| ||||| |||| |||||||   |||| ||||||||| |||  ||||||||||| ||||||||||    
T  19152545 aaaaatatgaaagagaaaagaattaaataacgtatatttttaaaataattaaat---agatattttaatgagtgtttgcctaaatgattttgatttggt 19152640  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 259
Target Start/End: Complemental strand, 39023600 - 39023477
Alignment:
Q  134 gcgcgcatacataaaagggaaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtcagcct 233  Q
    |||| ||||||||||| ||||||||||| |||||||| |||| ||| |||||||||||||||||| ||||||||||| || ||||||||| |||   |||    
T  39023600 gcgcacatacataaaaaggaaaagtatgaaagagaaaagaattaaaaaatatatctttttgaaataattaaatgataaatattttaatgagtgt--acct 39023503  T
Q  234 aaatgatattgatttggtgttgtatc 259  Q
    || |||| ||||||||||||||||||    
T  39023502 aagtgattttgatttggtgttgtatc 39023477  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 272
Target Start/End: Original strand, 28574472 - 28574615
Alignment:
Q  129 tttaggcgcgcatacataaaagggaaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtc 228  Q
    |||||||||  | ||||||||  |||||||||| |||||||| ||||  || |||||||||||||||||| | |||||||||||| ||||||||| |||     
T  28574472 tttaggcgcatacacataaaaaagaaaagtatgaaagagaaaagaatttaa-aatatatctttttgaaataactaaatgatagatattttaatgagtgtg 28574570  T
Q  229 agcctaaatgatattgatttggtgttgtat-catataaatatttc 272  Q
     ||||||| ||| ||||||||||||||| | ||||||| ||||||    
T  28574571 tgcctaaaagattttgatttggtgttgtgtccatataagtatttc 28574615  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 153 - 275
Target Start/End: Complemental strand, 45669999 - 45669876
Alignment:
Q  153 aaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtcagcctaaatgatattgatttggtg 252  Q
    |||| |||| |||||||| |||| ||||||||| | ||||| |||| |||||||||||||| ||||||||| |||  |||||||| || |||||||||||    
T  45669999 aaaaatatgaaagagaaaagaattaaataatattttttttttaaataattaaatgatagatattttaatgagtgtgtgcctaaataattttgatttggtg 45669900  T
Q  253 ttgtatc-atataaatatttctca 275  Q
    |||| || |||||| |||||||||    
T  45669899 ttgtctctatataagtatttctca 45669876  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 35106736 - 35106587
Alignment:
Q  103 gtcacaaacataaatataaatcgttgtttaggcgcgcatacataaaagggaaaagtatggaagagaaaggaatgaaataatatatctttttgaaattatt 202  Q
    ||||||||||||||||||| || ||   |||||||| | ||||| ||| |||||||||| |||||||   ||| |||||||||||||||||||||| |||    
T  35106736 gtcacaaacataaatataactcatt---taggcgcgtacacatacaagtgaaaagtatgaaagagaagtaaattaaataatatatctttttgaaataatt 35106640  T
Q  203 aaatgatagatgttttaatgaatgtcagcctaaatgatattgatttggtgttgt 256  Q
    ||||||||||| ||| ||||| |||   ||||||| || |||||||||||||||    
T  35106639 aaatgatagatatttgaatgagtgtgtccctaaataat-ttgatttggtgttgt 35106587  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 274
Target Start/End: Original strand, 7155171 - 7155293
Alignment:
Q  153 aaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtcagcctaaatgatattgatttggtg 252  Q
    ||||||||| |||||||| |||| ||||||||||| |||||||||| |||||||||||||| ||||||||| |||    ||||||||| ||||||| ||     
T  7155171 aaaagtatgaaagagaaaagaattaaataatatatatttttgaaataattaaatgatagatattttaatgagtgtatatctaaatgattttgatttagta 7155270  T
Q  253 ttgtatc-atataaatatttctc 274  Q
    |||| || |||||| ||||||||    
T  7155271 ttgtgtctatataagtatttctc 7155293  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 4261420 - 4261319
Alignment:
Q  153 aaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtcagcctaaatgatattgatttggtg 252  Q
    ||||||||| ||||||||  ||| ||||||||||| |||||||||| ||||||| |||||| ||||||| | |||  | ||||||||| |||||||||||    
T  4261420 aaaagtatgaaagagaaa--aattaaataatatatatttttgaaataattaaataatagatattttaattagtgtgtgtctaaatgattttgatttggtg 4261323  T
Q  253 ttgt 256  Q
    ||||    
T  4261322 ttgt 4261319  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 275
Target Start/End: Original strand, 8787617 - 8787750
Alignment:
Q  140 atacataaaagggaaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtcagcctaaatga 239  Q
    |||||||||||  ||||||||| |||||||| || ||||||||||||||||||| ||| || |||||||||||| | ||||||| | |  |  |||||||    
T  8787617 atacataaaaga-aaaagtatgaaagagaaaagattgaaataatatatcttttt-aaaataataaatgatagatatattaatgagtatgtgtttaaatga 8787714  T
Q  240 tattgatttggtgttgtatcatataaatatttctca 275  Q
    | |||||||| ||||||  ||||||| |||||||||    
T  8787715 ttttgatttgatgttgttccatataagtatttctca 8787750  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 43793277 - 43793171
Alignment:
Q  153 aaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtcagcctaaatgatattgatttggtg 252  Q
    ||||||||| |||||||| |||| ||||| |||||||||||||||| |||||||||||||||| ||||||| ||   ||||||||||| ||||||| |||    
T  43793277 aaaagtatgaaagagaaaagaattaaatattatatctttttgaaataattaaatgatagatgtattaatgagtgcgtgcctaaatgattttgatttagtg 43793178  T
Q  253 ttgtatc 259  Q
     ||||||    
T  43793177 atgtatc 43793171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 256
Target Start/End: Original strand, 42507238 - 42507351
Alignment:
Q  144 ataaaagggaaaagtatggaagagaaaggaatgaaataata-tatctttttgaaattattaaatgatagatgttttaatgaatgtcagcctaaatgatat 242  Q
    |||||||  ||||||||| || ||||| |||| |||||||| |||||||||||||| ||||||| |||||| || |||||| |||  |  || ||||| |    
T  42507238 ataaaagaaaaaagtatgaaaaagaaaagaattaaataataatatctttttgaaataattaaataatagatattataatgagtgtatgattatatgattt 42507337  T
Q  243 tgatttggtgttgt 256  Q
    ||||||||| ||||    
T  42507338 tgatttggtattgt 42507351  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 16611089 - 16611197
Alignment:
Q  148 aagggaaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtcagcctaaatgatattgatt 247  Q
    ||||||||||| || ||||||||| ||| ||  |||||||||||||||||| |||||||||||||| ||||||||||| |  ||||||||||| || |||    
T  16611089 aagggaaaagtgtgaaagagaaagaaattaataaatatatctttttgaaataattaaatgatagatattttaatgaatatgtgcctaaatgattttaatt 16611188  T
Q  248 tggtgttgt 256  Q
    |||| ||||    
T  16611189 tggttttgt 16611197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 137 - 256
Target Start/End: Original strand, 8164468 - 8164587
Alignment:
Q  137 cgcatacataaaagggaaaagtatggaagagaaaggaatgaaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtcagcctaaa 236  Q
    |||| |||||||||  ||||||||| |||||||||||||  || |||||| ||||||||||| |||||| ||||||| ||||||| |||||  |||||||    
T  8164468 cgcacacataaaagaaaaaagtatgaaagagaaaggaattcaaaaatatacctttttgaaataattaaaggatagatattttaataaatgtgtgcctaaa 8164567  T
Q  237 tgatattgatttggtgttgt 256  Q
      || |||||||||||||||    
T  8164568 aaattttgatttggtgttgt 8164587  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 3272549 - 3272453
Alignment:
Q  177 aaataatatatctttttgaaattattaaatgatagatgttttaatgaatgtcagcctaaatgatattgatttggtgttgtatc-atataaatatttc 272  Q
    ||||||||||| |||||||||| ||||||| |||||| ||||||||| | |  | ||||||||| ||||||||||||||| || |||||| ||||||    
T  3272549 aaataatatatatttttgaaataattaaataatagatattttaatgagtatatgtctaaatgattttgatttggtgttgtgtctatataattatttc 3272453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 12748401 - 12748447
Alignment:
Q  181 aatatatctttttgaaattattaaatgatagatgttttaatgaatgt 227  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||    
T  12748401 aatatatctttttgaaataattaaatgatagatattttaatgaatgt 12748447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 12748169 - 12748202
Alignment:
Q  142 acataaaagggaaaagtatggaagagaaaggaat 175  Q
    |||||||||||||||||||| |||||||||||||    
T  12748169 acataaaagggaaaagtatgaaagagaaaggaat 12748202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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