View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_high_23 (Length: 277)
Name: NF7020_high_23
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_high_23 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 15890284 - 15890008
Alignment:
| Q |
1 |
agctttctggaactgtttatattactcacactcaaatgttgggtggtgcactttcaactccaacaactcaatgcctcaaaacaagaacaacaatagttac |
100 |
Q |
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| T |
15890284 |
agctttctggaactgttcatattactcacactcaaatgttgggtggtgcactttcaactccaacaactcaatgcctcaaaacaagaacaacaatagttac |
15890185 |
T |
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| Q |
101 |
gatgctttatccatctcatagattattgtccacacatttttgtctctttaaggtaccacttctcttcatccatgttccttgnnnnnnngtctgaatactc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15890184 |
gatgctttatccatctcatagattattgtccacacatttttgtctctttaaggtaccacttctcttcatccatgttccttgtttttttgtctgaatactc |
15890085 |
T |
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| Q |
201 |
ctcaaattaagcgtgtcttagtgccggatatgtatcgtttgtatatcaacacgtataattacattgaattatgtcat |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |
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| T |
15890084 |
ctcaaattaagcgtgtcttagtgccggatatgtatcgtttggataccaacacgtataattccattgaattatgtcat |
15890008 |
T |
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