View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_high_28 (Length: 245)
Name: NF7020_high_28
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 26616558 - 26616763
Alignment:
| Q |
15 |
tttggtgttgcaagtatttaatgaggacatagcatctactattcttcaaaccccgttgattaatcaagtccctaatgatcatatggtttggaaggcagag |
114 |
Q |
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| T |
26616558 |
tttggtgatgcaagtatttaatgaggacatagcatctattattctttaaaccccgttgattaatcaagtccctaatgatcatatggtttggaa------- |
26616650 |
T |
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| Q |
115 |
aaaaacattatgtgttttgtctgtagtacatataggttgtgtgttgatgagttagttgagactttccatttgcggcgtccggggttttggatgggtattt |
214 |
Q |
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| T |
26616651 |
aaaaatagtatgtattttgtctgtaatatatacaggttgtgtgttgatgagttagttgagacttcccatttgcggcgtccggggttttggatgggtattt |
26616750 |
T |
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| Q |
215 |
ggaggttgaaagt |
227 |
Q |
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||||||||||||| |
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| T |
26616751 |
ggaggttgaaagt |
26616763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 9927927 - 9928115
Alignment:
| Q |
15 |
tttggtgttgcaagtatttaatgaggacatagcatctactattcttcaaaccccgttgattaatcaagtccctaatgatcatatggtttggaaggcagag |
114 |
Q |
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||||||| |||||| |||| |||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| ||| |||||| |
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| T |
9927927 |
tttggtgaggcaagtgtttagtgaggacataacatctactattctttaaaccccgttgatcaatcaagtccctaatgatcatatgattttgaaagcagag |
9928026 |
T |
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| Q |
115 |
aaaaacattatgtgttttgtctgtagtacatataggttgtgtgttgatgagttagttgagactttccatttgcggcgtccggggttttg |
203 |
Q |
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| T |
9928027 |
aaaaacggtatgtattatgtccgcagttcctacagtttgtctgttgatgtgttagttaacacttcgcatttgcggcgtccagggttttg |
9928115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 35150256 - 35150360
Alignment:
| Q |
123 |
tatgtgttttgtctgtagtacatataggttgtgtgttgatgagttagttgagactttccatttgcggcgtccggggttttggatgggtatttggaggttg |
222 |
Q |
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||||| || |||||||||| |||| | |||||||||||||||||||||||| |||| ||| |||||||| |||||| |||||| | ||||||||||||| |
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| T |
35150256 |
tatgtattctgtctgtagtgcatacatgttgtgtgttgatgagttagttgacacttcccacttgcggcgcccgggggtttggacgattatttggaggttg |
35150355 |
T |
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| Q |
223 |
aaagt |
227 |
Q |
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||||| |
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| T |
35150356 |
aaagt |
35150360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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