View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_high_35 (Length: 211)
Name: NF7020_high_35
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 34586078 - 34585880
Alignment:
| Q |
2 |
atatacaaaagcaagagtaaaaattatataactaaaatataacagactttgaatccctctttttctaagacat----gttttcttgaacaatccacttat |
97 |
Q |
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| T |
34586078 |
atatacaaaagcaagagtaaaaattatataactaaaatataacagactttgaatccctctttttctaagacatacatgttttcttgaacaatccacttat |
34585979 |
T |
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| Q |
98 |
ctgatgagagtaccaaacattcgaaatgaacttaaggtaattaaacagttgagagggagagaaacttctgaagacaactcgttgtaggatgcattttgt |
196 |
Q |
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| T |
34585978 |
ctgatgagagtaccaaacattcgaaatgaacttaaggtaattaaacagttgagagggagagaaacttctgaagacaactcgttgtaggatgcattttgt |
34585880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 34584570 - 34584448
Alignment:
| Q |
74 |
tgttttcttgaacaatccacttatctgatgagagtaccaaacattcgaaatgaacttaaggtaattaaacagttgagagggagagaaacttctgaagaca |
173 |
Q |
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|||||||||||||| |||||||||| |||||||||| ||||||| |||||| ||||||||||| | |||||||||||||||||||||||||||||| || |
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| T |
34584570 |
tgttttcttgaacagtccacttatccgatgagagtaacaaacatctgaaatgtacttaaggtaactgaacagttgagagggagagaaacttctgaagcca |
34584471 |
T |
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| Q |
174 |
actcgttgtaggatgcattttgt |
196 |
Q |
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|||| ||||||||| |||||||| |
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| T |
34584470 |
actccttgtaggatccattttgt |
34584448 |
T |
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