View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_high_5 (Length: 542)
Name: NF7020_high_5
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 322 - 525
Target Start/End: Complemental strand, 10215256 - 10215056
Alignment:
| Q |
322 |
gatcccaagatataaatttatttgagtagtaatatctcttatttctaattgatcaaaaatccttattgtctcc-aaagaaaactctctaaaacaatagtt |
420 |
Q |
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| T |
10215256 |
gatcccaagatataaatttatttgagtagtaatatctcttatttctatttgatcaaa--tccttattgtctcccaaagaaaactctctaaaacaatagtt |
10215159 |
T |
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| Q |
421 |
ataggtaatcgaaataatagatatattattcaccttttatgttttcttttaaattaaatattgacattttacaaatctaagttagaaaagtggatgtcca |
520 |
Q |
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| T |
10215158 |
ataggtaatcgaaataatagatatattattcacctttt--gttttcttttaaattaaatattgacattttacaaatctaagttagaaaagtggatgtcca |
10215061 |
T |
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| Q |
521 |
ttatg |
525 |
Q |
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| T |
10215060 |
ttatg |
10215056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 10215585 - 10215405
Alignment:
| Q |
1 |
tggggtaataaaatgttgaggacaagaaaaactcacctgaggagagtttctactcaaaatattgaaagaaagaaaagatgatgatgctctacaagtctac |
100 |
Q |
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| T |
10215585 |
tgggataataaaatgttgaggacaagaaaa-ctcacctgaggagaatttctactcaaaatattgaaagaaagaaaagatgatgatgctctacaagtctac |
10215487 |
T |
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| Q |
101 |
aactaaagatttatgtgttatttagtcttttacttctaaataatataaaaaataagtgccaaggatttgattcatctaaagt |
182 |
Q |
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| T |
10215486 |
aactaaagatttatgtgttatttagtcttttacttctaaataatataaaaaataagtgccaaggatttgattcatctaaagt |
10215405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 10215381 - 10215321
Alignment:
| Q |
197 |
ttagagtataatggtatatatattttgtgacttaaagactagatgcacttttttacttaca |
257 |
Q |
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| T |
10215381 |
ttagagtataatggtatatatattttgtgacttaaagactagatgcacttttttacttaca |
10215321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 517
Target Start/End: Original strand, 10099930 - 10100014
Alignment:
| Q |
426 |
taatcgaaataatagatatattattcaccttttatgttttcttttaaattaaatattgacattttacaaatctaagttagaaaagtggatgt |
517 |
Q |
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| T |
10099930 |
taatcaaaataatagatatattattcacctttt---ttttaattt----taaatattgacattttacaaatttaaattagaaaagttgatgt |
10100014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 10099111 - 10099175
Alignment:
| Q |
19 |
aggacaagaaaaactc--acctgaggagagtttctactcaaaatattgaaagaaagaaaagatgatg |
83 |
Q |
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| T |
10099111 |
aggacaagaaaaactctcacctgaggagagtttctactc--aatattagaagaacgaaaagatgatg |
10099175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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