View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_high_6 (Length: 481)
Name: NF7020_high_6
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 3 - 308
Target Start/End: Original strand, 2521489 - 2521794
Alignment:
| Q |
3 |
catctcgaataatataatatgtctcctatgattccattattttggaaactactcacattttactttcgcttaacttatttcatgcagcttggtgggatga |
102 |
Q |
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| T |
2521489 |
catctcgagtcatataatatgtctcctatgattccattattctggaaactactcacattttactttcgcttaacttatttcatgcagcttggtgggatga |
2521588 |
T |
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| Q |
103 |
attcctttttgttaactgaatttgagcattcgataccactgttttcaaaaatacctacattggttattggaatggatgtttcacatggatctcaaggtca |
202 |
Q |
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| T |
2521589 |
attcctttttgttaactgaatttaagcattcgataccactgttttcaaaaatacctacattggttattggaatggatgtttcacatggatctcaaggtca |
2521688 |
T |
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| Q |
203 |
atcagaagcactatccattgctgcgatatggtataactttaggttttcatgtcactatatattaagtgtgatattaaccataagcacacaatgtttacct |
302 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2521689 |
atcagaagcactatccattgctgcggtatggtataactttaggttttcatgtcactatatattaagtgtgatattaaccataagcacacaatgtttacct |
2521788 |
T |
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| Q |
303 |
aatatt |
308 |
Q |
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|||||| |
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| T |
2521789 |
aatatt |
2521794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 339 - 463
Target Start/End: Original strand, 2521791 - 2521915
Alignment:
| Q |
339 |
tattattcaggttgtgagctcaagatgttggcctcaaatctctcgttacaaagctgtagtccgcactcagtcgtcaaaagtagagatcgttcagtctcta |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2521791 |
tattattcaggttgtgagctcaagatgttggcctcaaatctctcgttacaaagctgtagtccgcactcagtcgtcaaaagtagagatcgttcagtctcta |
2521890 |
T |
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| Q |
439 |
ttcaagcctgtttctgatactaagg |
463 |
Q |
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||||||||||||||||||||||||| |
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| T |
2521891 |
ttcaagcctgtttctgatactaagg |
2521915 |
T |
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