View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_high_7 (Length: 467)
Name: NF7020_high_7
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 2988522 - 2988121
Alignment:
| Q |
19 |
aaaacaatgaatctccactttacaaaaaggtacaaggaggagtaattagtgcaactataaaatagtaacatggagtgctcatattttgctgtgaaatcag |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2988522 |
aaaaaaatgaatctccactttacaaaaaggtacaaggaggagtaattagtgcaactataaaatagtaacatggagtgctcatattttgctgtgaaatcag |
2988423 |
T |
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| Q |
119 |
aaaaagatagggagctactggccnnnnnnnttggtccataccacattttgccttgatgtcagagagaaagataggggttaattataagcaaatgttagat |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2988422 |
aaaaagatagggagctactggccaaaaaaattggtccataccacattttgccttgatgtcagagagaaagataggggttaattataagcaaatgtt-gat |
2988324 |
T |
|
| Q |
219 |
tttttagatttatttaataaatgataggagttaaaaagtagaaatttgtttataattgaaatcggagtcagagatattagttttatctaaaaatcgaaag |
318 |
Q |
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| T |
2988323 |
attt-agatttatttaataaatgataggagttaaaaagtagaaatttgtttataattgaaatcagagtcagagatattagttttatctaaaaatcgaaag |
2988225 |
T |
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| Q |
319 |
agttggaagagttaaaagatcgtgattcaaatattagtgaagacgaaaaatactaatataattactaattaacaacgacttactgttcaagtttgatttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2988224 |
agttggaagagttaaaagatcgtgattcaaatattagtgaagacgaaaaatactaatataatgactaattaacaacgacttactgttcaagtttgatttt |
2988125 |
T |
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| Q |
419 |
gggc |
422 |
Q |
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|||| |
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| T |
2988124 |
gggc |
2988121 |
T |
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