View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_low_1 (Length: 953)
Name: NF7020_low_1
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 763; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 763; E-Value: 0
Query Start/End: Original strand, 8 - 778
Target Start/End: Original strand, 3111789 - 3112559
Alignment:
| Q |
8 |
tttggtgttcagaagccaaaatcaccacttggaaattcagaagttctcgatattataagtcgctgcaactcaaccggtggtccatctggaagattttggg |
107 |
Q |
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| T |
3111789 |
tttggtgttcagaagccaaaatcaccacttggaaattcagaagttctcgatattataagtcgctgcaactcaaccggtggtccatctggaagattttggg |
3111888 |
T |
|
| Q |
108 |
tactagatcctgttgatggcacactcgggtttgttcgtggcgatcaatatgctgtagctctagcgctcgtagaggatggagaagtagtgcttggtgttct |
207 |
Q |
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| T |
3111889 |
tactagatcctgttgatggcacactcgggtttgttcgtggcgatcaatatgctgtagctctagcgctcgtagaggatggagaagtagtgcttggtgttct |
3111988 |
T |
|
| Q |
208 |
tggctgtccaaattaccctatgcggaaggaatggttaagttatcaacaccggtatcataggattgtatcgaagttgactcctccaacttctgaaagttgg |
307 |
Q |
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| T |
3111989 |
tggctgtccaaattaccctatgcggaaggaatggttaagttatcaacaccggtatcataggattgtatcgaagttgactcctccaacttctgaaagttgg |
3112088 |
T |
|
| Q |
308 |
aacaaaggttgtgtgctatatgctaaaaagggtacaggaaaggcttggatgcaaccattgctacatgtgaataagatgtttgtgtggccaaaccatgcaa |
407 |
Q |
| |
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| T |
3112089 |
aacaaaggttgtgtgctatatgctaaaaagggtacaggaaaggcttggatgcaaccattgctacatgtgaataagatgtttgtgtggccaaaccatgcaa |
3112188 |
T |
|
| Q |
408 |
tacaaatttttgtctctaacattgacaatccagctttggccactttttgtgaaccagttgagaaggccaattcaagccattcttttactgcaggacttgc |
507 |
Q |
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| T |
3112189 |
tacaaatttttgtctctaacattgacaatccagctttggccactttttgtgaaccagttgagaaggccaattcaagccattcttttactgcaggacttgc |
3112288 |
T |
|
| Q |
508 |
tcacagtgttggtctcaggtacatttatcttttttcaatttcatttcgatatcaattactctctgcctctcccttttcacctcttgatctttgttgtttg |
607 |
Q |
| |
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| T |
3112289 |
tcacagtgttggtctcaggtacatttatcttttttcaatttcatttcgatatcaattactcactgcctctcccttttcacctcttgatctttgttgtttg |
3112388 |
T |
|
| Q |
608 |
atcattgatgttgaaaaagagaaaacaagaggcatatggtgaaccatgtgtttcaactacccaacgtagattcttcatatagacttaaatttgtttgtga |
707 |
Q |
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| T |
3112389 |
atcattgatgttgaaaaagagaaaacaagaggcatatggtgaaccatgtgttccaactacccaacgtagattcttcatatagacttaaatttgtttgtga |
3112488 |
T |
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| Q |
708 |
aagtttactaaaaataattacagggtattctactcgtagttacatgatattcttatttacacgatcatatt |
778 |
Q |
| |
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| T |
3112489 |
aagtttactaaaaataattacagggtattctactcgtagttacatgatattcttatttacacgatcatatt |
3112559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 796 - 953
Target Start/End: Original strand, 3112554 - 3112711
Alignment:
| Q |
796 |
catattagcacgggattattatgatgttcttgttcttcttaaatatccctgataaattgctaccagatagattctaaaatttaaaattcatgaataaggt |
895 |
Q |
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| T |
3112554 |
catattagcacgggattattatgatgttcttgttcttcttaaatatccctgataaattgctaccagatagattctaaaatttaaaattcatgaataaggt |
3112653 |
T |
|
| Q |
896 |
cgaataatcctgttaaattggcactcttgagataaagaggttgttaaataaaactgaa |
953 |
Q |
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| T |
3112654 |
cgaataatcctgttaaattggcactcttgagataaagaggttgttaaataaaactgaa |
3112711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 23 - 533
Target Start/End: Complemental strand, 35894221 - 35893708
Alignment:
| Q |
23 |
ccaaaatcaccacttggaaattcagaagttctcgatattataagtcgctgcaactcaaccggtggtccatctggaagattttgggtactagatcctgttg |
122 |
Q |
| |
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||||||||| | ||||||| |||||| ||||| || || || |||| |||||||||| || |||| || ||||||||||||| |||| |||| ||| |
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| T |
35894221 |
ccaaaatcagctcttggaacttcagaggttcttgaaatcattagtcactgcaactcagttgggggtcattcgggaagattttgggcactaagtcctcttg |
35894122 |
T |
|
| Q |
123 |
atggcacactcgggtttgttcgtggcgatcaatatgctgtagctctagcgctcgtagaggatggagaagtagtgcttggtgttcttggctgtccaaatta |
222 |
Q |
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| T |
35894121 |
atggtaaattgggatttgtaaatggtgatcaatatgctgtagctttatcactcgtagaggatggagaagtggtggttggtgttcttgggtgtcctaacta |
35894022 |
T |
|
| Q |
223 |
ccctatgcggaaggaatggttaagttatcaacaccggtatcataggattgtatcgaagttgactcctccaacttctgaaagttggaacaaaggttgtgtg |
322 |
Q |
| |
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||||||| | ||||| ||| | ||||||| || | ||||||||||| | || ||||||| ||||||||| ||||||| |||||| | ||||||||| |
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| T |
35894021 |
ccctatgagaaaggactggcttggttatcagcaaagttatcataggatcatgtccaagttgattcctccaacatctgaaacttggaatagaggttgtgta |
35893922 |
T |
|
| Q |
323 |
ctatatgctaaaaagggtacaggaaaggcttggatgcaacca---ttgctacatgtgaataagatgtttgtgtggccaaaccatgcaatacaaatttttg |
419 |
Q |
| |
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| ||||||||||||| || || ||||||||||| |||||| | | |||| ||||||| ||||||||||||||||||||||| || | ||| | |
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| T |
35893921 |
atttatgctaaaaaggatagtggcaaggcttggatccaaccactcatccatcatgccaataagaagtttgtgtggccaaaccatgcaaaactagtttctt |
35893822 |
T |
|
| Q |
420 |
tctctaacattgacaatccagctttggccactttttgtgaaccagttgagaaggccaattcaagccattcttttactgcaggacttgctcacagtgttgg |
519 |
Q |
| |
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| ||| ||||||| | || ||||||||||| || || |||||||| |||| |||||||| || || ||||||| ||||| ||||| |||||||| |
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| T |
35893821 |
tgtcttctgttgacaacctaggattggccactttgtgccaaacagttgaggaggctaattcaagtcactcctttactgatggactggctcatagtgttgg |
35893722 |
T |
|
| Q |
520 |
tctcaggtacattt |
533 |
Q |
| |
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| |||||| ||||| |
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| T |
35893721 |
tttcaggtgcattt |
35893708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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