View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_low_10 (Length: 443)
Name: NF7020_low_10
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 114 - 362
Target Start/End: Complemental strand, 24427151 - 24426902
Alignment:
| Q |
114 |
ctccccctgttcatcttcttttagtatcatcttcttccctccactctttcttcatcattttcataaactttatc-tcttaatcaaacaaacatannnnnn |
212 |
Q |
| |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24427151 |
ctccccatgttcatcttctcttagtatcatcttcttccctccactctttcttcatcattttcataaactttatcatcttaatcaaacaaacataattttt |
24427052 |
T |
|
| Q |
213 |
nnnagaaattaatcacttcctatcattctcatcttaatcaaacaaacataatcgtcctccttcttcgtatcattcttcttcctcccaaatctaaattcat |
312 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24427051 |
tttagaaattaatcacttcctatcattctcatcttaatgaaacaaacataatcgtcctccttcttcgtatcattcttcttccttccaaatctaaattcat |
24426952 |
T |
|
| Q |
313 |
aattgaagcataaaagatcaagatgaatcaagcagaaaccaagctcataa |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24426951 |
aattgaagcataaaagatcaagatgaatcaagcagaaaccaagctcataa |
24426902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 259 - 410
Target Start/End: Complemental strand, 24426906 - 24426755
Alignment:
| Q |
259 |
cataatcgtcctccttcttcgtatcattcttcttcctcccaaatctaaattcataattgaagcataaaagatcaagatgaatcaagcagaaaccaagctc |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
24426906 |
cataatcgtcctccttcttcgtatcattcttcttcctcccaaatctaaattcataattgaagtataaaagatcaagatgaatcaagcagaaacaaagctc |
24426807 |
T |
|
| Q |
359 |
ataaaatcatcttcacaaacttaaataaaagcgaacaaaacacaacacaaca |
410 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24426806 |
ataaaattatcttcacaaacttaaataaaagcgaacaaaacacaacacaaca |
24426755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 267 - 406
Target Start/End: Complemental strand, 31489532 - 31489393
Alignment:
| Q |
267 |
tcctccttcttcgtatcattcttcttcctcccaaatctaaattcataattgaagcataaaagatcaagatgaatcaagcagaaaccaagctcataaaatc |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
31489532 |
tcctccttcttcgtatcattcttcttcctcccaaatctaaattcataatcaaagcataaaagatcaagatgaatcaagctgaaaccaagctcataaactt |
31489433 |
T |
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| Q |
367 |
atcttcacaaacttaaataaaagcgaacaaaacacaacac |
406 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
31489432 |
atcttcacaaacctaaataaaagcgaacaaaacacaacac |
31489393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 119 - 244
Target Start/End: Complemental strand, 31489713 - 31489588
Alignment:
| Q |
119 |
cctgttcatcttcttttagtatcatcttcttccctccactctttcttcatcattttcataaactttat-ctcttaatcaaacaaacatannnnnnnnnag |
217 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| ||||||||||||| || |
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| T |
31489713 |
cctgttcatcttctcttactatcatcttcttccctccgctctttcttcatcattttcataaactatataatcttagtcaaacaaacata-atttttttag |
31489615 |
T |
|
| Q |
218 |
aaattaatcacttcctatcattctcat |
244 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
31489614 |
aaattaatcacttcctatcattctcat |
31489588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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