View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_low_12 (Length: 429)
Name: NF7020_low_12
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_low_12 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 49536700 - 49536290
Alignment:
| Q |
1 |
gaaggaaaggagaaagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgagaaggtatttgcat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49536700 |
gaaggaaaggagaaagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgagaaggtatttgcat |
49536601 |
T |
|
| Q |
101 |
agatatagagaattagaggtagatagaacaccaactactactaataatattcaagatagaggaaattaatttcttgtcttaatgcccaaggttttcttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
49536600 |
agatatagagaattagaggtagatagaacaccaactactactaataatattcaagatagaggaaattaatttcttgtcttaagggccaaggttttcttaa |
49536501 |
T |
|
| Q |
201 |
tgtgtcatgattccacaactaggaagttaattacttgttttgtttgttgttaattactacatcttaatcttaattacatgtacttttgtcatttgtaatc |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49536500 |
tgtgtcatgattccacaactaggaagttaattacttgttttgtttgttgttgattactacatcttaatctaaattacatgtacttttgtcatttgtaatc |
49536401 |
T |
|
| Q |
301 |
agcatgctttagttgatttgctgaacttgagatcccttgactttgtatttttagaattgaaagtgttaaacttgttcacatcagagtatattcatcatcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49536400 |
agcatgctttagttgatttgctgaacttgagatcccttgactttgtatatttagaattgaaagtgttgaacttgttcacatcagagtatattcatcatcc |
49536301 |
T |
|
| Q |
401 |
tgacctcttct |
411 |
Q |
| |
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||||||||||| |
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| T |
49536300 |
tgacctcttct |
49536290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 38177016 - 38176606
Alignment:
| Q |
1 |
gaaggaaaggagaaagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgagaaggtatttgcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38177016 |
gaaggaaaggagaaagacagtgaatggtgatgatatatgttgggctttggggacacttggttttgatgattatgcttaaccaatgagaaggtatttgcat |
38176917 |
T |
|
| Q |
101 |
agatatagagaattagaggtagatagaacaccaactactactaataatattcaagatagaggaaattaatttcttgtcttaatgcccaaggttttcttaa |
200 |
Q |
| |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
38176916 |
agatatagagaattaggggtagaaagaacaccaactactactaataatattcaagatagaggaaattaatttcttgtcttaagggccaaggttttcttaa |
38176817 |
T |
|
| Q |
201 |
tgtgtcatgattccacaactaggaagttaattacttgttttgtttgttgttaattactacatcttaatcttaattacatgtacttttgtcatttgtaatc |
300 |
Q |
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|
||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |
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| T |
38176816 |
tgtgtcatgattcaacaacta-gaaattaattacttgttttgtttgttgttaattactacagcttaatcttaattacatgtacttttggcatctgtaatc |
38176718 |
T |
|
| Q |
301 |
agcatgctttagttgatttgctgaacttgagatccctt-gactttgtatttttagaattgaaagtgttaaacttgttcacatcagagtatattcatcatc |
399 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
38176717 |
agcatgctttagttgatttgctgaacttgagatcccttagactttgtttttttagaattgaaagtgttgaacttgttcacatcagagtatatccatcatc |
38176618 |
T |
|
| Q |
400 |
ctgacctcttct |
411 |
Q |
| |
|
||||||||||| |
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| T |
38176617 |
ttgacctcttct |
38176606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 39786345 - 39786245
Alignment:
| Q |
14 |
aagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgagaaggtatttgcatagatatagagaat |
113 |
Q |
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||||||||||||||||||||| | |||||||||||||| ||||| || ||||||||||| ||||| ||| | | |||||||||| ||| ||||| |||| |
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| T |
39786345 |
aagacagtgaatggtgatgatgtttgttgggctttggggacactagggtttgatgattacgctgagccactcaaaaggtatttgtataagtatagggaat |
39786246 |
T |
|
| Q |
114 |
t |
114 |
Q |
| |
|
| |
|
|
| T |
39786245 |
t |
39786245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 94 - 406
Target Start/End: Original strand, 7523808 - 7524123
Alignment:
| Q |
94 |
tttgcatagatatagagaattagaggtagatagaacaccaactactactaataat--attcaagatagaggaaattaatttcttgtcttaatgcccaagg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| | |||||| |
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| T |
7523808 |
tttgcatagatatagagaattagaggtagatataacaccaactactactaatagtgtattcaagatagaggaaattaatttcttgtcttaagggccaagg |
7523907 |
T |
|
| Q |
192 |
ttttctta--atgtgtcatgattccacaa-ctaggaagttaattacttgttttgtttgttgttaattactacatcttaatcttaattacatgtacttttg |
288 |
Q |
| |
|
|||||||| |||||||||||||| | || |||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7523908 |
ttttcttacaatgtgtcatgattcaagaaactagaaa-ttaattacttgtttt-tttgttgttaattactacatcttaatcttaattacatgtacttttg |
7524005 |
T |
|
| Q |
289 |
tcatttgtaatcagcatgctttagttgatttgctgaacttgagatcccttgactttgtatttttagaattgaaagtgttaaacttgttcacatcagagta |
388 |
Q |
| |
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||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |
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| T |
7524006 |
gcatctgtagtcagcatgctttagttgatttgctgaacttgagatcccttgactttgtttttttagaattgaaagtgttgaacttgttcacagcagagta |
7524105 |
T |
|
| Q |
389 |
tattcatcatcctgacct |
406 |
Q |
| |
|
|| |||||||||||||| |
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|
| T |
7524106 |
aatccatcatcctgacct |
7524123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0392 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 14727 - 14611
Alignment:
| Q |
1 |
gaaggaaaggagaaagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgagaaggtatttgcat |
100 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
14727 |
gaaggaaaggagaaagactgtaaatggtgatgatatttgttgggctttagcaacacttggttttgatgattatgctgagccaatgagaaggtacttgcat |
14628 |
T |
|
| Q |
101 |
agatatagagaattaga |
117 |
Q |
| |
|
|| |||||||| ||||| |
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|
| T |
14627 |
aggtatagagagttaga |
14611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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