View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_low_16 (Length: 406)
Name: NF7020_low_16
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 47739147 - 47738778
Alignment:
| Q |
20 |
gtgagttgattttagcaacaaaaaattacaatggtcaacacaatttaaacccatatttgttgtgttttttagcaccttcaaatgggaggttaggtacgag |
119 |
Q |
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| T |
47739147 |
gtgagttgattttagcaacaaaaaattacaatggtcaacacaatttaaacccatatttgttgtgttttttagcaccttcaaatgggaggttaggtacgag |
47739048 |
T |
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| Q |
120 |
tattagaaacatcatggaacctgatcaaaaacaaaattgagtatatgaaattggaggctccacatt-ctaatactttcaattccttcaattcaagtgttg |
218 |
Q |
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| T |
47739047 |
tcttagaaacatcatggaacctgatcaaaaacaaaattgagtatatgaaattggaggctccacatttctaatactttcaattccttcaa-----gtgttg |
47738953 |
T |
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| Q |
219 |
aaactggttagtgattaaagttgacttgaatggtctattcttttcattaatgaatgtttgtagatggttacaattgcatgaaataacactgttccttccc |
318 |
Q |
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| T |
47738952 |
aaactggttagtgattaaagttgacttgaatggtctattcttttcattaatgaatgtttgtagatggttacaattgcatgaaataacactgttccttccc |
47738853 |
T |
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| Q |
319 |
attggtccatatttttggttagccagccaccttttggtgccttccctctcccttattcctcacttctcttcgtct |
393 |
Q |
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| T |
47738852 |
attggtccatatttttggttagccagccaccttttggtgccttccctctcccttattcctcacttctcttcgtct |
47738778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 47743491 - 47743378
Alignment:
| Q |
20 |
gtgagttgattttagcaacaaaaaattacaat------ggtcaacacaatttaaacccatatttgttgtgttttttagcaccttcaaatgggaggttagg |
113 |
Q |
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| T |
47743491 |
gtgagttgattttagcaacaaacaattacaattataatggtcaacacaattcaaatcc-tatctgttgtgtttgttagcaccttcgaatgggaggttagg |
47743393 |
T |
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| Q |
114 |
tacgagtattagaaa |
128 |
Q |
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| T |
47743392 |
tacgagtcttagaaa |
47743378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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