View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_low_17 (Length: 389)
Name: NF7020_low_17
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 30958904 - 30959230
Alignment:
| Q |
8 |
caatcaaatcttaatcatcagtgtacacacatgactttcatatgatcttaatctctttctttcactaacagaacataatgaggacaatttcatgacatat |
107 |
Q |
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| T |
30958904 |
caatcaaatcttaatcatcagtgtacacacacgactttcatatgatcttaatctctttctttcactaacagaacataatgaggacaatttcatgacatat |
30959003 |
T |
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| Q |
108 |
aaaatatgcacattgcatgtatactcatctaatcacaccgataaaactaacgatccaatgcagattcaacacttatatc-----acatgacatgtaggat |
202 |
Q |
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| T |
30959004 |
taaatatgcacattgcatgtatactcatctaatcacaccgataaaactaacgatccaatgcagattcaacacttatatcacatgacatgacatgtaggat |
30959103 |
T |
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| Q |
203 |
attcaacatatcgtcatcaaaattatttaatacttacttagcttatattttcaactaattaaggacagtgcaatagcaagataagataaccaatacaata |
302 |
Q |
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| T |
30959104 |
attcaacatatcgtcatcaaaattatttaatacttacttagcttatattttcaac----taaggacagtgcaatagcaagataagataaccaatacaata |
30959199 |
T |
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| Q |
303 |
atcatgtcaaatatcgtaagacatgcacaat |
333 |
Q |
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| T |
30959200 |
atcatgtcaaatatcttaagacatgcacaat |
30959230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 30959493 - 30959550
Alignment:
| Q |
63 |
tttctttcactaacagaacataatgaggacaatttcatgacatataaaatatgcacat |
120 |
Q |
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| T |
30959493 |
tttctttcattaactaaacataatgaggagaattgcatgacatgtaaaatatgcacat |
30959550 |
T |
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