View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_low_19 (Length: 370)
Name: NF7020_low_19
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 4 - 361
Target Start/End: Complemental strand, 2163302 - 2162947
Alignment:
| Q |
4 |
atgtcgaagaatatcagggaccagatacagattgcatgccatatattgagtgcaaggcaaatctacaacggaatactataggaaaagacccaagatacac |
103 |
Q |
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| T |
2163302 |
atgtcgaataaaatcagggaccagacacagattgcatgtcatatattgagtgcaaggcaaatctacaacggaatacaataggaaaagacccaagatacac |
2163203 |
T |
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| Q |
104 |
tatcgaaagttataaaagaccagttaatagttaaaaagtgacatcaaaatctaacaccactttttataaagaaataacctaaattcttttcagaacagcc |
203 |
Q |
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| T |
2163202 |
tatagaaagtta--aaagaccagttaatagttaaaaagtgacatcaaaatctaacaccgctttttataaagaaataacctaaattcttttcagaacagcc |
2163105 |
T |
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| Q |
204 |
actccgctactgactctgtcctcacaaataaaatatatgatttaactggggctatgtgttttactctcaaattcacagtaaaaaagaaaacactgataca |
303 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2163104 |
actccactactgactctgtcctcacaaataaaatatatgatttaactggggctatgtgttttactctcacattcacagtaaaaaagaaaacactgataca |
2163005 |
T |
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| Q |
304 |
ccggtaattcaatcccaaagttctagagtcaaaggaaaagaactacctgatgtccatc |
361 |
Q |
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| T |
2163004 |
ccggtaattcaatcccaaagttctagagtcaaaggaaaagaactacctgatgaccatc |
2162947 |
T |
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