View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_low_24 (Length: 306)
Name: NF7020_low_24
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 40429722 - 40429998
Alignment:
| Q |
18 |
cctgatgttcaaaatgacctaaaaatgtttcctttcgagacttttgaaggttcagatggtggcattttgattcacttggaatacttgaatgagactcata |
117 |
Q |
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| T |
40429722 |
cctgatgttcaaaatgacctaaaaatgtttcctttcgagacttttgaaggttcagatggtggcattttgattcacttggaatacttgaatgagactcata |
40429821 |
T |
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| Q |
118 |
agtttacaccggttcaaatattaggaatgctctttgctcacttgaagactatagctgaaaatgatttggggtctgctgtttcggattgtgttattggagt |
217 |
Q |
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| T |
40429822 |
agtttacaccggttcaaatattaggaatgctctttgctcacttgaagactatagctgaaaatgatttggggtctgctgtttcggattgtgttattggagt |
40429921 |
T |
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| Q |
218 |
tccatcatactttactgacttgcagagacgagcgtatctcgatgcggcaacaattgttgggttgaagcctttgatgt |
294 |
Q |
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| T |
40429922 |
tccatcatactttactgacttgcagagacgagcgtatctcgatgcggcaacaattgttgggttgaagcctttgatgt |
40429998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 57 - 291
Target Start/End: Original strand, 20258221 - 20258455
Alignment:
| Q |
57 |
acttttgaaggttcagatggtggcattttgattcacttggaatacttgaatgagactcataagtttacaccggttcaaatattaggaatgctctttgctc |
156 |
Q |
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|||| |||||| |||| |||||| |||||||||| ||| |||||||| ||| || ||||| ||||||||| ||||||||| | ||||||||||||| |
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| T |
20258221 |
acttctgaagggccagacggtggcgttttgattcatttgaaatacttggatgggattcatacgtttacaccagttcaaataatgtctatgctctttgctc |
20258320 |
T |
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| Q |
157 |
acttgaagactatagctgaaaatgatttggggtctgctgtttcggattgtgttattggagttccatcatactttactgacttgcagagacgagcgtatct |
256 |
Q |
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| T |
20258321 |
acttgaagactatgacagaaaaagatttggaggcacccatctcggattgtgttattggtatcccatcatacttcaccgacttgcagagacgggcatatct |
20258420 |
T |
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| Q |
257 |
cgatgcggcaacaattgttgggttgaagcctttga |
291 |
Q |
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| T |
20258421 |
tgatgcggcaataattgctgggttgaagcctttga |
20258455 |
T |
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