View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_low_25 (Length: 298)
Name: NF7020_low_25
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 2521382 - 2521098
Alignment:
| Q |
1 |
cgccaatatacccttttgcatccaatatacatagattggcaggggcgaaccaaacttaaaggttagtgtggataaacacactttggagttatctaagtgt |
100 |
Q |
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| T |
2521382 |
cgccaatatacccttttgcatccaatatacatagattggcaggg-cgaaccaaacttaaaggttagtgtggataaacacactttggagttatctaagtgt |
2521284 |
T |
|
| Q |
101 |
aatcttcatgaacatcctttttgttcaagtttttattgaagcaacctcacaaaacaagattaaacataaaacatatgcattacctttgcattaattttca |
200 |
Q |
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| T |
2521283 |
aatcttcatgaacatcctttttattcaagtttttattgaagcaaccccacaaaacaagattaaacataaaacatatgcattacctttgcattaattttca |
2521184 |
T |
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| Q |
201 |
atagaacattaataatgtaatgatcattaatttttgttggagcaatgcattgtgtcgcaatcccttcatcaacaagacatcttctt |
286 |
Q |
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| T |
2521183 |
atagaacattaataatgtaatgatcattaatttttgttggagcaatgcattgtgttgcaatcccttcatcaacaagacatcttctt |
2521098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 30283731 - 30283786
Alignment:
| Q |
16 |
ttgcatccaatatacatagattggcaggggcgaaccaaacttaaaggttagtgtgg |
71 |
Q |
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| T |
30283731 |
ttgcatccaatatacatttattggtgggggcgaatcgaacttaaaggttagtgtgg |
30283786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 14615344 - 14615288
Alignment:
| Q |
16 |
ttgcatccaatatacatagattggcaggggcgaaccaaacttaaaggttagtgtgga |
72 |
Q |
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| T |
14615344 |
ttgcatccaatatacatttattggtgggggcgaatcgaacctaaaggttagtgtgga |
14615288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 26842155 - 26842220
Alignment:
| Q |
63 |
ttagtgtggataaacacactttggagttatctaagtgtaatcttcatgaacatcctttttgttcaagt |
130 |
Q |
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||||| |||||| ||| ||||| ||||| ||||||||||||||||| |||| ||| ||||||||||| |
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| T |
26842155 |
ttagtttggatacacatactttagagtt--ctaagtgtaatcttcatcaacaacctctttgttcaagt |
26842220 |
T |
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