View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_low_29 (Length: 271)
Name: NF7020_low_29
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 26 - 254
Target Start/End: Original strand, 7461456 - 7461679
Alignment:
| Q |
26 |
tatattactatagtgttttgtttttatttgtatcaacacaacactagtaacgtcaatttagggcaagcatgctaccatgtttcttctctggtggtcttca |
125 |
Q |
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| T |
7461456 |
tatattactatagtgttttgtttttatttgtatcaacacaacactagtaacgtcaatttagggcaagcatgctaccatgtttcttctctggtggtcttga |
7461555 |
T |
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| Q |
126 |
tannnnnnnnattcactatattgttgttatgactttgtttaattaaaaaagttgtttgcttagtttaatcccctaaatgttgaaagagagaataagcact |
225 |
Q |
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| T |
7461556 |
ttttttttttattcactatattgttgtta-----ttgtttaattaaaaaagttgtttgcttagtttaataccctaaatgttgaaagagagaataggcact |
7461650 |
T |
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| Q |
226 |
agcatgcaaccagttcttcaggacaaagc |
254 |
Q |
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| T |
7461651 |
agcatgcaacgagttctttaggacaaagc |
7461679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 7446468 - 7446565
Alignment:
| Q |
26 |
tatattactatagtgttttgtttttatttgtatcaacacaacactagtaacgtcaatttagggcaagcatgctaccatgtttcttctctggtggtctt |
123 |
Q |
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| T |
7446468 |
tatattactatagtgttttgtttttatttgtctcaacacaacaccagtaacgtcaatttagggcaagcatgttaccatgtttcttctctggtggtctt |
7446565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 7446593 - 7446681
Alignment:
| Q |
169 |
taaaaaagttgtttgcttagtttaatcccctaaa---tgttgaaagagagaataagcactagcatgcaaccagttcttcaggacaaagc |
254 |
Q |
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| T |
7446593 |
taaaaaagttgtttgcttagtttaatccactaaatgttgttgatagagagaagaaacactagcatgcaaccggttctttaggacaaagc |
7446681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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