View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7020_low_32 (Length: 250)

Name: NF7020_low_32
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7020_low_32
NF7020_low_32
[»] chr1 (8 HSPs)
chr1 (1-243)||(7861837-7862079)
chr1 (163-235)||(37631636-37631708)
chr1 (187-234)||(47432041-47432088)
chr1 (175-216)||(34795521-34795562)
chr1 (187-235)||(45145171-45145219)
chr1 (192-235)||(41184727-41184770)
chr1 (187-244)||(30582016-30582073)
chr1 (192-240)||(14385835-14385883)
[»] chr3 (5 HSPs)
chr3 (175-235)||(10704650-10704710)
chr3 (175-235)||(30956703-30956763)
chr3 (175-235)||(30972515-30972575)
chr3 (174-216)||(21335607-21335649)
chr3 (187-216)||(24684919-24684948)
[»] chr2 (11 HSPs)
chr2 (162-232)||(32592507-32592577)
chr2 (177-235)||(41241209-41241267)
chr2 (186-227)||(2195905-2195946)
chr2 (170-235)||(42868538-42868603)
chr2 (187-235)||(42420371-42420419)
chr2 (177-235)||(15305592-15305650)
chr2 (163-216)||(23974586-23974639)
chr2 (45-86)||(26004208-26004249)
chr2 (178-235)||(43279604-43279661)
chr2 (187-235)||(12464550-12464598)
chr2 (187-235)||(45229457-45229505)
[»] chr6 (7 HSPs)
chr6 (170-228)||(31623488-31623546)
chr6 (163-235)||(8147624-8147695)
chr6 (177-216)||(35070726-35070765)
chr6 (187-231)||(4163120-4163164)
chr6 (187-231)||(4224741-4224785)
chr6 (187-235)||(30536423-30536471)
chr6 (177-233)||(30536637-30536693)
[»] chr4 (6 HSPs)
chr4 (163-233)||(43505877-43505947)
chr4 (175-233)||(9760373-9760431)
chr4 (189-235)||(50681166-50681212)
chr4 (177-235)||(54069494-54069552)
chr4 (187-235)||(3155548-3155596)
chr4 (195-235)||(42404075-42404115)
[»] chr7 (7 HSPs)
chr7 (163-232)||(21568708-21568777)
chr7 (177-233)||(9210563-9210619)
chr7 (163-235)||(46078068-46078140)
chr7 (177-235)||(420295-420353)
chr7 (193-235)||(20258463-20258505)
chr7 (165-235)||(45264016-45264088)
chr7 (177-230)||(45806408-45806461)
[»] chr5 (4 HSPs)
chr5 (187-235)||(3932762-3932810)
chr5 (177-235)||(42500302-42500360)
chr5 (187-235)||(9107057-9107105)
chr5 (187-235)||(35446000-35446048)
[»] chr8 (3 HSPs)
chr8 (192-235)||(29205758-29205801)
chr8 (187-235)||(16825614-16825662)
chr8 (175-235)||(35534688-35534747)
[»] scaffold0024 (1 HSPs)
scaffold0024 (187-232)||(21358-21403)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 7861837 - 7862079
Alignment:
Q  1 aaaagttgtcaatctaattcatcaatgtagtccctgatatgtgatatcttaatagcagtgactcaattgatggattttatatacttttgttatatatgca 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7861837 aaaagttgtcaatctaattcatcaatttagtccctgatatgtgatatcttaatagcagtgactcaattgacggattttatatacttttgttatatatgca 7861936  T
Q  101 taggttagggactaagggcctgtttgaatgaacaacttattgcaacttatagtacaggcactataagctcttaagcataagctttgataagctattttta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7861937 taggttagggactaagggcctgtttgaatgaacaacttattgcaacttatggtacaggcactataagctcttatgcataagctttgataagctattttta 7862036  T
Q  201 tagaaaaagataaaatgatggtaaattgtttttgtctctgcta 243  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  7862037 tagaaaaagataaaatgatggtaaattgtttttgtctatgcta 7862079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 37631708 - 37631636
Alignment:
Q  163 ataagctcttaagcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    |||||| ||||  |||||||||  ||||||||| |||||||| ||||||||||||| | ||||||||||||||    
T  37631708 ataagcgcttatacataagcttacataagctatctttatagagaaagataaaatgaagctaaattgtttttgt 37631636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 47432041 - 47432088
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgtttttg 234  Q
    |||||||||||||||||||||||||||||| | | |||||||||||||    
T  47432041 ataagctatttttatagaaaaagataaaataaagttaaattgtttttg 47432088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 34795562 - 34795521
Alignment:
Q  175 gcataagctttgataagctatttttatagaaaaagataaaat 216  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  34795562 gcataagcttagataagctatttttattgaaaaagataaaat 34795521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 45145171 - 45145219
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||||||||||| |||||||||||| ||  ||||||||||||||    
T  45145171 ataagctatttttatagcaaaagataaaataatattaaattgtttttgt 45145219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 41184770 - 41184727
Alignment:
Q  192 ctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    |||||||||||| |||||||||||| ||| ||||||||||||||    
T  41184770 ctatttttatagcaaaagataaaataatgttaaattgtttttgt 41184727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 30582073 - 30582016
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgtttttgtctctgctac 244  Q
    ||||| |||||||||||||||||||||||| | | ||| |||||||||| | ||||||    
T  30582073 ataaggtatttttatagaaaaagataaaataaagttaacttgtttttgtatatgctac 30582016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 14385883 - 14385835
Alignment:
Q  192 ctatttttatagaaaaagataaaatgatggtaaattgtttttgtctctg 240  Q
    |||||||||||| |||||||| ||| ||| |||||||||||||| ||||    
T  14385883 ctatttttatagcaaaagatagaataatgttaaattgtttttgtatctg 14385835  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 10704710 - 10704650
Alignment:
Q  175 gcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||||  |||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  10704710 gcataagcttacataagctacttttatagcaaaagataaaatgatgttaaattgtttttgt 10704650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 30956763 - 30956703
Alignment:
Q  175 gcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||||  ||||||||||| ||||| |||||||||||| | | ||||||||||||||    
T  30956763 gcataagcttacataagctatttctatagcaaaagataaaataaagttaaattgtttttgt 30956703  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 30972575 - 30972515
Alignment:
Q  175 gcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||||  ||||||||||| ||||| |||||||||||| | | ||||||||||||||    
T  30972575 gcataagcttacataagctatttctatagcaaaagataaaataaagttaaattgtttttgt 30972515  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 21335607 - 21335649
Alignment:
Q  174 agcataagctttgataagctatttttatagaaaaagataaaat 216  Q
    |||||||||||  |||||||| |||||||||||||||||||||    
T  21335607 agcataagcttaaataagctaattttatagaaaaagataaaat 21335649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 216
Target Start/End: Complemental strand, 24684948 - 24684919
Alignment:
Q  187 ataagctatttttatagaaaaagataaaat 216  Q
    ||||||||||||||||||||||||||||||    
T  24684948 ataagctatttttatagaaaaagataaaat 24684919  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 32592507 - 32592577
Alignment:
Q  162 tataagctcttaagcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttt 232  Q
    ||||||| |||| | ||||||||  |||| ||||||||||||||||||||||||| ||| |||||||||||    
T  32592507 tataagcgcttatgtataagcttgcataaactatttttatagaaaaagataaaataatgttaaattgtttt 32592577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 41241267 - 41241209
Alignment:
Q  177 ataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||  ||||||||||| ||||| |||||||||||||| | ||||||||||||||    
T  41241267 ataagcttacataagctatttctataggaaaagataaaatgaagttaaattgtttttgt 41241209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 2195905 - 2195946
Alignment:
Q  186 gataagctatttttatagaaaaagataaaatgatggtaaatt 227  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  2195905 gataagctatttttatagaaaaagataaaatgaagttaaatt 2195946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 42868603 - 42868538
Alignment:
Q  170 cttaagcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    |||| ||||||| ||  |||||||||||| ||||||||||||||||| | | ||||||||||||||    
T  42868603 cttatgcataagtttacataagctattttcatagaaaaagataaaataaagttaaattgtttttgt 42868538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 42420419 - 42420371
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||||||||||| |||||||||||| | | ||||||||||||||    
T  42420419 ataagctatttttatagcaaaagataaaataacgttaaattgtttttgt 42420371  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 15305592 - 15305650
Alignment:
Q  177 ataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||  ||||||||||||||||| ||| |||||||| ||| |||||| |||||||    
T  15305592 ataagcttgcataagctatttttatagcaaatgataaaataatgttaaattatttttgt 15305650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 23974639 - 23974586
Alignment:
Q  163 ataagctcttaagcataagctttgataagctatttttatagaaaaagataaaat 216  Q
    |||||| |||| ||||||||||   ||||||||||||||||||||||| |||||    
T  23974639 ataagcacttatgcataagcttacttaagctatttttatagaaaaagacaaaat 23974586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 26004249 - 26004208
Alignment:
Q  45 tatcttaatagcagtgactcaattgatggattttatatactt 86  Q
    |||||||||| ||| |||| ||||||||||||||||||||||    
T  26004249 tatcttaatatcagggactaaattgatggattttatatactt 26004208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 43279661 - 43279604
Alignment:
Q  178 taagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    |||||||  ||||||||||||||||  |||||||||||| |||  |||||||||||||    
T  43279661 taagcttgcataagctatttttatatcaaaagataaaataatgtgaaattgtttttgt 43279604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 12464598 - 12464550
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||||| | |||||||||||||||| | | ||||||||||||||    
T  12464598 ataagctatttctgtagaaaaagataaaataaagttaaattgtttttgt 12464550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 45229457 - 45229505
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||||| ||||| ||| |||||||||| | ||||||||||||||    
T  45229457 ataagctatttctatagcaaacgataaaatgaggttaaattgtttttgt 45229505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 31623488 - 31623546
Alignment:
Q  170 cttaagcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattg 228  Q
    |||| ||||||||||  || ||||||||||||||||||||||||||||| | |||||||    
T  31623488 cttatgcataagcttacattagctatttttatagaaaaagataaaatgacgttaaattg 31623546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 8147624 - 8147695
Alignment:
Q  163 ataagctcttaagcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    |||||| ||||||||||||||   ||||||||||||||||| |||||||||||| | | | ||||||||||||    
T  8147624 ataagcgcttaagcataagctac-ataagctatttttatagcaaaagataaaataaagttgaattgtttttgt 8147695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 35070765 - 35070726
Alignment:
Q  177 ataagctttgataagctatttttatagaaaaagataaaat 216  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  35070765 ataagcttacataagctatttttatagaaaaagataaaat 35070726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 4163120 - 4163164
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgttt 231  Q
    |||||||||||||||||||| ||||||||| | | ||||||||||    
T  4163120 ataagctatttttatagaaatagataaaataaagttaaattgttt 4163164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 4224741 - 4224785
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgttt 231  Q
    |||||||||||||||||||| ||||||||| | | ||||||||||    
T  4224741 ataagctatttttatagaaatagataaaataaagttaaattgttt 4224785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 30536423 - 30536471
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    |||||||||| |||||| ||| |||||||| ||| ||||||||||||||    
T  30536423 ataagctattattatagcaaatgataaaataatgttaaattgtttttgt 30536471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 30536693 - 30536637
Alignment:
Q  177 ataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgttttt 233  Q
    ||||||||  ||||||||||||||||| ||||||||| || | | ||||||||||||    
T  30536693 ataagcttgcataagctatttttatagcaaaagataagataacgttaaattgttttt 30536637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 43505877 - 43505947
Alignment:
Q  163 ataagctcttaagcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgttttt 233  Q
    |||||| |||| | ||||||||  ||||||||||||||||| |||||||||||| | | ||||||||||||    
T  43505877 ataagcacttatgtataagcttgcataagctatttttatagcaaaagataaaataacgttaaattgttttt 43505947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 9760373 - 9760431
Alignment:
Q  175 gcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgttttt 233  Q
    ||||||||||| ||||| ||||||||| |||||||||||||| | | |||||| |||||    
T  9760373 gcataagctttcataagttatttttattgaaaaagataaaataaagttaaattcttttt 9760431  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 50681212 - 50681166
Alignment:
Q  189 aagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||||||||| | |||||||||| ||| ||||||||||||||    
T  50681212 aagctatttttataggataagataaaataatgttaaattgtttttgt 50681166  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 54069552 - 54069494
Alignment:
Q  177 ataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||  ||| ||||||||||||  |||||||||||| ||| ||||||||||||||    
T  54069552 ataagcttgcatatgctatttttatatcaaaagataaaataatgttaaattgtttttgt 54069494  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 3155548 - 3155596
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||||| ||||| |||||||||||| | | ||||||||||||||    
T  3155548 ataagctatttctatagcaaaagataaaataaagttaaattgtttttgt 3155596  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 42404115 - 42404075
Alignment:
Q  195 tttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||| |||||||||||| ||| ||||||||||||||    
T  42404115 tttttatagcaaaagataaaataatgttaaattgtttttgt 42404075  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 21568777 - 21568708
Alignment:
Q  163 ataagctcttaagcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttt 232  Q
    |||||| |||| | ||||||||  ||||||||||||||||| |||||||| ||||||| ||| |||||||    
T  21568777 ataagcacttatgtataagcttgcataagctatttttatagcaaaagatagaatgatgttaacttgtttt 21568708  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 9210563 - 9210619
Alignment:
Q  177 ataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgttttt 233  Q
    ||||||||  |||||||| ||||||||||||| ||||||||||| |||||| |||||    
T  9210563 ataagcttgcataagctacttttatagaaaaaaataaaatgatgttaaattcttttt 9210619  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 46078068 - 46078140
Alignment:
Q  163 ataagctcttaagcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    |||||| |||| | ||||||||  ||||| |||||||||||||||||||||||  | | ||||||||||||||    
T  46078068 ataagcgcttatgtataagcttacataagttatttttatagaaaaagataaaacaaagttaaattgtttttgt 46078140  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 420295 - 420353
Alignment:
Q  177 ataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||  ||||||||| ||||||| |||||||||||| ||| | ||||||||||||    
T  420295 ataagcttgcataagctatgtttatagcaaaagataaaataatgttcaattgtttttgt 420353  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 20258463 - 20258505
Alignment:
Q  193 tatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||||| |||||||||||| ||| ||||||||||||||    
T  20258463 tatttttatagcaaaagataaaataatgttaaattgtttttgt 20258505  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 45264016 - 45264088
Alignment:
Q  165 aagctcttaagcataagctttgataagctatttt--tatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    |||| |||| ||||||||||  ||||||||||||  ||||||||||||| |||| | | ||||||||||||||    
T  45264016 aagcgcttacgcataagcttacataagctatttttttatagaaaaagatgaaataaagttaaattgtttttgt 45264088  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 45806461 - 45806408
Alignment:
Q  177 ataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtt 230  Q
    ||||||||  ||||||||||||||||| |||||||||||| | | |||||||||    
T  45806461 ataagcttgcataagctatttttatagcaaaagataaaataacgttaaattgtt 45806408  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 3932810 - 3932762
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||||||||||| |||||||||||||| | | ||||||||||||    
T  3932810 ataagctatttttatagcaaaagataaaatgaagtttaattgtttttgt 3932762  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 42500360 - 42500302
Alignment:
Q  177 ataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||  ||||||||||||||||  |||||||||||| | | ||||||||||||||    
T  42500360 ataagcttgcataagctatttttatatcaaaagataaaataaagttaaattgtttttgt 42500302  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 9107057 - 9107105
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    |||||||||||||| ||||||||||||||| | | |||||| |||||||    
T  9107057 ataagctatttttaaagaaaaagataaaataaagttaaattatttttgt 9107105  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 35446000 - 35446048
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||||||||||| ||| |||||||| | | ||||||||||||||    
T  35446000 ataagctatttttatagcaaatgataaaataaagttaaattgtttttgt 35446048  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 29205758 - 29205801
Alignment:
Q  192 ctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    |||||| |||||||||||||||||||| | ||||||||||||||    
T  29205758 ctatttctatagaaaaagataaaatgaagttaaattgtttttgt 29205801  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 16825662 - 16825614
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    |||||||||| |||||| ||| |||||||| ||| ||||||||||||||    
T  16825662 ataagctattcttatagtaaaggataaaataatgttaaattgtttttgt 16825614  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 35534747 - 35534688
Alignment:
Q  175 gcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgt 235  Q
    ||||||||||  ||||| ||||||||||| |||||||||||| | | ||||||||||||||    
T  35534747 gcataagcttacataagatatttttatag-aaaagataaaataaagttaaattgtttttgt 35534688  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 21403 - 21358
Alignment:
Q  187 ataagctatttttatagaaaaagataaaatgatggtaaattgtttt 232  Q
    ||||||||||||||||| |||||||||||| | | |||||||||||    
T  21403 ataagctatttttataggaaaagataaaataaagttaaattgtttt 21358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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