View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7020_low_34 (Length: 245)

Name: NF7020_low_34
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7020_low_34
NF7020_low_34
[»] chr6 (2 HSPs)
chr6 (18-229)||(27876563-27876774)
chr6 (18-170)||(8481612-8481764)
[»] chr4 (4 HSPs)
chr4 (18-229)||(48699675-48699886)
chr4 (18-229)||(42268155-42268366)
chr4 (18-229)||(30948037-30948248)
chr4 (18-194)||(2001129-2001305)
[»] chr2 (1 HSPs)
chr2 (18-229)||(827731-827942)
[»] chr3 (3 HSPs)
chr3 (18-229)||(5821129-5821340)
chr3 (18-229)||(2815117-2815328)
chr3 (18-223)||(42587203-42587408)
[»] chr8 (2 HSPs)
chr8 (18-229)||(9441946-9442157)
chr8 (68-223)||(24596348-24596503)
[»] chr5 (2 HSPs)
chr5 (18-229)||(41720662-41720873)
chr5 (18-229)||(34354262-34354473)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 27876774 - 27876563
Alignment:
Q  18 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaata 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27876774 gaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtgaaaaccgcctgttatgtaata 27876675  T
Q  118 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctacaagtgtttggttgtcctg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  27876674 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtgtttggttgtcctg 27876575  T
Q  218 tgtacgtgatgt 229  Q
    ||||||||||||    
T  27876574 tgtacgtgatgt 27876563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 8481764 - 8481612
Alignment:
Q  18 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaata 117  Q
    ||||| |||||||||||| | |||||||||||||| || |||||| |||||||||||||| || | |||| |||| | |||||  || |||||||| ||     
T  8481764 gaataaaactctcctagataaaacaagagttatgcagagaacagcaggaatggccaagtcttttttggcaaaagctgcgaaaatggcatgttatgtgatc 8481665  T
Q  118 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaa 170  Q
    ||||| || |||| ||| || |||| |||||| |||||||||||||| |||||    
T  8481664 aatcgatctccataaactgcaattggtttgaaaacaccgatggagatttggaa 8481612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 48699886 - 48699675
Alignment:
Q  18 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaata 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48699886 gaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtgaaaaccgcctgttatgtaata 48699787  T
Q  118 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctacaagtgtttggttgtcctg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  48699786 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtgtttggttgtcctg 48699687  T
Q  218 tgtacgtgatgt 229  Q
    ||||||||||||    
T  48699686 tgtacgtgatgt 48699675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 42268155 - 42268366
Alignment:
Q  18 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaata 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42268155 gaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtgaaaaccgcctgttatgtaata 42268254  T
Q  118 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctacaagtgtttggttgtcctg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  42268255 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtgtttggttgtcctg 42268354  T
Q  218 tgtacgtgatgt 229  Q
    |||| |||||||    
T  42268355 tgtatgtgatgt 42268366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 30948248 - 30948037
Alignment:
Q  18 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaata 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30948248 gaatagaactctcctagaaagaacaagagctatgctgaaaacagcggaaatggccaagtcgttctgggcagaagcagtgaaaaccgcctgttatgtaata 30948149  T
Q  118 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctacaagtgtttggttgtcctg 217  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||    
T  30948148 aatcgctcaccatcaacgacgattgatttgaagacaccaatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctg 30948049  T
Q  218 tgtacgtgatgt 229  Q
    ||||||||||||    
T  30948048 tgtacgtgatgt 30948037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 2001129 - 2001305
Alignment:
Q  18 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaata 117  Q
    ||||| |||||||||| | ||||||||||  ||| ||| |||| | ||| |||| ||||| |||||||||||||| |||||||| |||| ||| || ||     
T  2001129 gaatataactctcctatatagaacaagagccatgttgagaacaacaggagtggctaagtctttctgggcagaagctgtgaaaactgcctattacgtgatc 2001228  T
Q  118 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttc 194  Q
    ||||| || |||||||| || |||| |||||| ||||| |||||||| ||||| |||||||||   |||||||||||    
T  2001229 aatcgatctccatcaaccgcaattggtttgaaaacaccaatggagatttggaacggaaagccacctgattattcttc 2001305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 827731 - 827942
Alignment:
Q  18 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  827731 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgtgcagaagcagtgaaaaccgcctgttatgtaata 827830  T
Q  118 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctacaagtgtttggttgtcctg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  827831 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtgtttggttgtcctg 827930  T
Q  218 tgtacgtgatgt 229  Q
    ||||||||||||    
T  827931 tgtacgtgatgt 827942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 5821340 - 5821129
Alignment:
Q  18 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaata 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5821340 gaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtgaaaaccgcctgttatgtaata 5821241  T
Q  118 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctacaagtgtttggttgtcctg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  5821240 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtgtttggttgtcctg 5821141  T
Q  218 tgtacgtgatgt 229  Q
    |||| |||||||    
T  5821140 tgtatgtgatgt 5821129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 2815328 - 2815117
Alignment:
Q  18 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaata 117  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2815328 gaatataactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtgaaaaccgcctgttatgtaata 2815229  T
Q  118 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctacaagtgtttggttgtcctg 217  Q
    ||||||||||||||||||  ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2815228 aatcgctcaccatcaacgttgattgatttgaagactcctatggagatgtggaaaggaaagccagtagattattcttctctacatgtgtttggttgtcctg 2815129  T
Q  218 tgtacgtgatgt 229  Q
    |||| |||||||    
T  2815128 tgtatgtgatgt 2815117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 42587203 - 42587408
Alignment:
Q  18 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaata 117  Q
    ||||||||||||| |||| | ||||||||  ||| ||| |||||| | | |||| ||||| |||||||||||||| ||||||||||||||||| || ||     
T  42587203 gaatagaactctcttagataaaacaagagccatgttgagaacagcagtagtggctaagtctttctgggcagaagctgtgaaaaccgcctgttacgtgatc 42587302  T
Q  118 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctacaagtgtttggttgtcctg 217  Q
    ||||| || |||||||| || |||| |||| | ||||| |||||||| ||||| |||||||||   |||||||||||  |||| ||||| || ||| |||    
T  42587303 aatcgatctccatcaaccgcaattggtttgtaaacaccaatggagatttggaacggaaagccacctgattattcttccttacatgtgttcggatgtactg 42587402  T
Q  218 tgtacg 223  Q
    ||||||    
T  42587403 tgtacg 42587408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 9442157 - 9441946
Alignment:
Q  18 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaata 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9442157 gaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtgaaaaccgcctgttatgtaata 9442058  T
Q  118 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctacaagtgtttggttgtcctg 217  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  9442057 aatcgctcaccatcaacggtgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtgtttggttgtcctg 9441958  T
Q  218 tgtacgtgatgt 229  Q
    |||| |||||||    
T  9441957 tgtatgtgatgt 9441946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 223
Target Start/End: Complemental strand, 24596503 - 24596348
Alignment:
Q  68 tggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaataaatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtg 167  Q
    |||| ||||| |||||||||||||| ||||||||||||| ||| || || ||||| ||  ||||||| || |||| |||||| ||||| |||||||| ||    
T  24596503 tggctaagtctttctgggcagaagctgtgaaaaccgcctattacgtgatcaatcgatctacatcaaccgcaattggtttgaaaacaccaatggagatttg 24596404  T
Q  168 gaaaggaaagccagtagattattcttctctacaagtgtttggttgtcctgtgtacg 223  Q
    ||| |||||||||   |||||||||||  |||| ||||| || ||| |||||||||    
T  24596403 gaacggaaagccacctgattattcttccttacatgtgttcggatgtactgtgtacg 24596348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 41720662 - 41720873
Alignment:
Q  18 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaata 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41720662 gaatagaactctcctagaaagaacaagagctatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcagtgaaaaccgcctgttatgtaata 41720761  T
Q  118 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctacaagtgtttggttgtcctg 217  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||    
T  41720762 aatcgctcaccatcaacggcgattgatttgaagacaccaatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctg 41720861  T
Q  218 tgtacgtgatgt 229  Q
    ||||||||||||    
T  41720862 tgtacgtgatgt 41720873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 34354262 - 34354473
Alignment:
Q  18 gaatagaactctcctagaaagaacaagagttatgctgaaaacagcgggaatggccaagtcgttctgggcagaagcggtgaaaaccgcctgttatgtaata 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34354262 gaatagaactctcctagaaagaacaagagctatgctgaaaacagcaggaatggccaagtcgttctgggcagaagcagtgaaaaccgcctgttatgtaata 34354361  T
Q  118 aatcgctcaccatcaacggcgattgatttgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctacaagtgtttggttgtcctg 217  Q
    |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34354362 aatcgctcaccatcaacgacaattgatttgaagacaccaatggagatgtggaaaggaaagccagtagattattcttctctacatgtgtttggttgtcctg 34354461  T
Q  218 tgtacgtgatgt 229  Q
    ||||||||||||    
T  34354462 tgtacgtgatgt 34354473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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