View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_low_35 (Length: 239)
Name: NF7020_low_35
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 27770237 - 27770389
Alignment:
| Q |
74 |
acctaattaacaagattttattttctttggtttcaactcaatcaaaacatgaacggtctgaatcat---attaattaataaccgagtaatgttgtagaca |
170 |
Q |
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| T |
27770237 |
acctaattaacaagattttattttgtttggtttcaactcaatcaaaacaagaacggtctgaatcatctgattaattaataaccgagaaatgttgtagaca |
27770336 |
T |
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| Q |
171 |
aggatcatcttccttaatagtaggaaagacacatatgtttctttctacatctctg |
225 |
Q |
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| T |
27770337 |
aggatcatcttccttaatagtaggaaagacacata--tttctttttacatctctg |
27770389 |
T |
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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 27770166 - 27770201
Alignment:
| Q |
19 |
ctaagtacccagagtctgtgatatgaagaaaatctg |
54 |
Q |
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| T |
27770166 |
ctaagtacccagagtctgtgatatgaagaaaatctg |
27770201 |
T |
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