View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_low_36 (Length: 230)
Name: NF7020_low_36
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 26454799 - 26455005
Alignment:
| Q |
1 |
tgtagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatcatgcttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454799 |
tgtagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatcatgcttc |
26454898 |
T |
|
| Q |
101 |
ttcgaagctacacttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaaagttgttttggtttctcaagtattatgctaccactt |
200 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26454899 |
ttcgaagctacgcttatcacctccgaaagccttctccttacattgctgtttttttggttcccaaagttgttttggtttctcaagtattatgctgccactt |
26454998 |
T |
|
| Q |
201 |
tcatctc |
207 |
Q |
| |
|
||||||| |
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| T |
26454999 |
tcatctc |
26455005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 26446627 - 26446827
Alignment:
| Q |
7 |
tatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatcatgcttcttcgaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| |
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| T |
26446627 |
tatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagattggtcgtggaaagactttgatagccatcatgcttctttgaa |
26446726 |
T |
|
| Q |
107 |
gctacacttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaaagttgttttggtttctcaagtattatgctaccactttcatct |
206 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26446727 |
gctacgcttatcacctccgaaagccttctccttacattgctattttttttattcccaaagttgttttggtttctcaagtattatgctgccactttcatct |
26446826 |
T |
|
| Q |
207 |
c |
207 |
Q |
| |
|
| |
|
|
| T |
26446827 |
c |
26446827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 26448935 - 26448801
Alignment:
| Q |
1 |
tgtagctatcaacttgaagcatt------ggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatca |
94 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
26448935 |
tgtagctatcaacttaaagcattttccatggataaagtgattcgtgaaaatactatagtgtacttggagcctggttgtggagagactttgatagccatca |
26448836 |
T |
|
| Q |
95 |
tgcttcttcgaagctacacttatcacctccgaaag |
129 |
Q |
| |
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|||||||| |||||||| ||||||||||| ||||| |
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| T |
26448835 |
tgcttctttgaagctacgcttatcacctctgaaag |
26448801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 26447813 - 26447728
Alignment:
| Q |
123 |
ccgaaagccttctccttacattgctgnnnnnnn-ggttcccaaagttgttttggtttctcaagtattatgctaccactttcatctc |
207 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |||||| ||||||||||||| |
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| T |
26447813 |
ccgaaagccttctccttacattgcttttttttttggttcccaaagttgttttgggttctcaaatactatgctgccactttcatctc |
26447728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 29673694 - 29673895
Alignment:
| Q |
1 |
tgtagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatcatgcttc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29673694 |
tgtagctaccaacttgaagcattggataaagcaatccgcgaaaatactatagtttacttagagactggttgtggaaagactttgatagccatcatgcttc |
29673793 |
T |
|
| Q |
101 |
ttcgaagctacacttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaaagttgttttggtttctcaagtattatgctaccactt |
200 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29673794 |
ttcgaagctacgcttatcacctccgaaagccttctccttacattgctgtttttttggttcccaaagttgttttggtttctcaagtattatgctgccactt |
29673893 |
T |
|
| Q |
201 |
tc |
202 |
Q |
| |
|
|| |
|
|
| T |
29673894 |
tc |
29673895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 11495693 - 11495509
Alignment:
| Q |
3 |
tagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatcatgcttctt |
102 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| || |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11495693 |
tagctatcagcttgaagcattggaaaaagcgatccgtgaaaataccatagtgtacttggagactggttctggaaagactttgatagccatcatgcttctt |
11495594 |
T |
|
| Q |
103 |
cgaagctacacttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaaagttgttttggtttctcaagtat |
187 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11495593 |
cgaagctacgcttatcacctccgaaagccttctccttacattgctgtgtttttggttcccaaagttgttttggtttctcaagtat |
11495509 |
T |
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