View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_low_6 (Length: 497)
Name: NF7020_low_6
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 497
Target Start/End: Original strand, 31662027 - 31662501
Alignment:
| Q |
19 |
aaatgggttggtagtctcgtcctctcagtcatcatccgaaacatctttatagcaatcttaacattctgctttgcatttggtatatataatcataatccca |
118 |
Q |
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| T |
31662027 |
aaatgggttggtagtctcgtcctctcagtcatcatccgaaacatctttatagtgatcttaacattctgctttgcatttggtatatataatcataatccca |
31662126 |
T |
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| Q |
119 |
ttctgatttgtgtgtgcgattcttataagcaaaacaactcannnnnnnattaaatggatcaattattcaatgaactttaaagcgcaaaattgcacatttt |
218 |
Q |
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| T |
31662127 |
ttct---ttgtgtgtgcgattcttataagcaaaacaacttatttttttattaaatggatcaattattcaatgaattttaaagggcaaaattgcacatttt |
31662223 |
T |
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| Q |
219 |
tgtcatgtgttggacttttcaaatctcaagtgnnnnnnnnnnnnnngtcttgtttcaaaatcattcagtttttgcgacatattcgggattattaaggttc |
318 |
Q |
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| T |
31662224 |
tgtcatgtgttggacttttcaaatttcaagtgtttttttgttttt-gtcttgtttcaaaatcattcagtttttgcgacatattcgggattattaaggttc |
31662322 |
T |
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| Q |
319 |
gatgacttggcttgttttgttggcagtgggaactttgttgggggctatgactggagctttgataggccaaaaaacagagagtggcttcattcgaggtgct |
418 |
Q |
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| T |
31662323 |
gatgacttggcttgttttgttggcagtgggaactttgttgggggctatgactggagctttgataggccaaaaaacagagagtggcttcattcgaggtgct |
31662422 |
T |
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| Q |
419 |
gcggttggtgctatgtcaggggctattttctctattgaagtctttcaatgttctattgatctttggcattgtgataatt |
497 |
Q |
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| T |
31662423 |
gcggttggtgctatgtcaggggctattttctctattgaagtctttgaatgttctattgatctttggcattgtgataatt |
31662501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 341 - 493
Target Start/End: Complemental strand, 9084869 - 9084717
Alignment:
| Q |
341 |
gcagtgggaactttgttgggggctatgactggagctttgataggccaaaaaacagagagtggcttcattcgaggtgctgcggttggtgctatgtcagggg |
440 |
Q |
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||||| ||||| || ||||| ||| |||| |||||||||||||| ||| | || || || || |||||||||||||| || ||||||||||| ||||| | |
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| T |
9084869 |
gcagttggaacattattgggtgctttgacaggagctttgataggtcaagagaccgaaagcggtttcattcgaggtgccgctgttggtgctatatcaggag |
9084770 |
T |
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| Q |
441 |
ctattttctctattgaagtctttcaatgttctattgatctttggcattgtgat |
493 |
Q |
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| T |
9084769 |
ctgttttttctattgaagtttttgaatcatctcttgttctttggcattctgat |
9084717 |
T |
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