View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7020_low_9 (Length: 454)
Name: NF7020_low_9
Description: NF7020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7020_low_9 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 4 - 454
Target Start/End: Complemental strand, 36893400 - 36892949
Alignment:
| Q |
4 |
ggagtagcagagaccaataagtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtaca |
103 |
Q |
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| T |
36893400 |
ggagaagcagagaccgataagtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtaca |
36893301 |
T |
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| Q |
104 |
gcgcttgctgtggcaaaggaaacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagac |
203 |
Q |
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| T |
36893300 |
gcgcttgctgtggcaaaggaaacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagac |
36893201 |
T |
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| Q |
204 |
ctttgtgtgttttcttgaaaatttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcaccaggcttttgatgtactgctccaa |
303 |
Q |
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| T |
36893200 |
ctttgtgtgttttcttgaaaatttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcacaaggcttttgatgtactgctccaa |
36893101 |
T |
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| Q |
304 |
tttaacataaataaaaaataatcacatggatcaacttgtacaatcattttcacttggaagagataaagattatac-attttatgtacctgaaaccatttt |
402 |
Q |
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| T |
36893100 |
tttaacataaataaaaaataatcacatggatcaacttgtacaaacattttcacttggaagagataaagattatacaattttatgtacctgaaaccatttt |
36893001 |
T |
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| Q |
403 |
atatcccacatcatttgcaaggcagaaccagcaatctgccaaggtttatcac |
454 |
Q |
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| T |
36893000 |
atatcccacatcatttgcaaggcagaaccagcaatctgccaaggtttatcac |
36892949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 36883392 - 36883098
Alignment:
| Q |
9 |
agcagagaccaataagtgaagaaatggcaaagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgct |
108 |
Q |
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| T |
36883392 |
agcaaagaccgataagtgaagaaatggcaaaggcgtcaaatgcaggcttgccttctaatactggactgccttcatcggttgtgccgccaggtacttggct |
36883293 |
T |
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| Q |
109 |
tgctgtggcaaaggaaacaccagctacaagggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttg |
208 |
Q |
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| T |
36883292 |
tgctgtggcaaaggaaacaccggctacaaggccagatacgacggagcaggattctgacgtgtcttttagccaactgctgctctcttgtataagattttcg |
36883193 |
T |
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| Q |
209 |
tgtgttttcttgaaaatttctcttgatgttttgccactgctgttgtttctgaaaatgaagtgttgtggcaccaggcttttgatgtactgctccaa |
303 |
Q |
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| T |
36883192 |
tgtgttgtcttgaaaatttcacttgatgttttgcccttgttgttgcttctaaagtagaagtgttgtggtacaaggcttttgatatactgctccaa |
36883098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 38 - 301
Target Start/End: Complemental strand, 36903168 - 36902908
Alignment:
| Q |
38 |
aagacatcgaatgcaggcttgccttctaataccggtctaccttgatcagttgtgccgccaggtacagcgcttgctgtggcaaaggaaacaccagctacaa |
137 |
Q |
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| T |
36903168 |
aagacattgaatgcaggattgccttctaatactggtctaccct---cagttgttccgccaggtactgcacttgttgtggtgaaggaagcaccagcgacaa |
36903072 |
T |
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| Q |
138 |
gggcagatacaacagagcaggattccgatgtgtcttttagccattcgctactgtcttttataagacctttgtgtgttttcttgaaaatttctcttgatgt |
237 |
Q |
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| || | |||||| |||||||| || | ||||| |||||||||||| | ||||||||||||||||||| |||| || |||||| || | | | ||| |
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| T |
36903071 |
gcgcggctacaaccgagcaggaatctgctgtgttttttagccattcattgctgtcttttataagaccttcatgtgattccttgaagatattttcagctgt |
36902972 |
T |
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| Q |
238 |
tttgccactgctgttgtttctgaaaatgaagtgttgtggcaccaggcttttgatgtactgctcc |
301 |
Q |
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| T |
36902971 |
tttgcctttgttgttgcttgtcaaatgtaagtgttctggcacaaggcttttgatatactgctcc |
36902908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 383 - 450
Target Start/End: Complemental strand, 36881936 - 36881869
Alignment:
| Q |
383 |
tatgtacctgaaaccattttatatcccacatcatttgcaaggcagaaccagcaatctgccaaggttta |
450 |
Q |
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| T |
36881936 |
tatgtacctgaaaccattttatatcccacatcatttgtaaggcagaaccagcaatctgccaaggttta |
36881869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 437
Target Start/End: Complemental strand, 36902141 - 36902087
Alignment:
| Q |
383 |
tatgtacctgaaaccattttatatcccacatcatttgcaaggcagaaccagcaat |
437 |
Q |
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| T |
36902141 |
tatgtacctgaaaccatttcatatcccacatcatttgtaatgcagacctagcaat |
36902087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 23278879 - 23278833
Alignment:
| Q |
387 |
tacctgaaaccattttatatcccacatcatttgcaaggcagaaccag |
433 |
Q |
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| T |
23278879 |
tacctgaaaccattttatatgccacatcatttgcaaggcagcaccag |
23278833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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