View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7021_low_3 (Length: 335)

Name: NF7021_low_3
Description: NF7021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7021_low_3
NF7021_low_3
[»] chr3 (20 HSPs)
chr3 (119-293)||(47371199-47371373)
chr3 (4-100)||(8400890-8400986)
chr3 (4-100)||(50823733-50823829)
chr3 (4-100)||(50852031-50852127)
chr3 (9-100)||(35198805-35198896)
chr3 (4-100)||(7417833-7417929)
chr3 (4-100)||(22371730-22371826)
chr3 (4-100)||(22855922-22856018)
chr3 (4-98)||(55468034-55468129)
chr3 (9-98)||(34824596-34824685)
chr3 (16-100)||(37330608-37330692)
chr3 (16-100)||(30534903-30534987)
chr3 (9-100)||(52545361-52545452)
chr3 (9-98)||(43334057-43334146)
chr3 (16-100)||(37454745-37454829)
chr3 (9-109)||(29635908-29636009)
chr3 (12-100)||(19872484-19872572)
chr3 (10-45)||(42876256-42876291)
chr3 (31-109)||(25910658-25910736)
chr3 (77-109)||(358934-358966)
[»] chr7 (14 HSPs)
chr7 (4-109)||(38265229-38265334)
chr7 (4-109)||(35109726-35109831)
chr7 (4-100)||(37095211-37095307)
chr7 (4-100)||(34721869-34721965)
chr7 (4-98)||(38405157-38405251)
chr7 (4-100)||(21577099-21577195)
chr7 (4-97)||(41151207-41151301)
chr7 (9-98)||(16059356-16059445)
chr7 (4-100)||(245265-245361)
chr7 (9-109)||(45278492-45278592)
chr7 (4-97)||(12472156-12472249)
chr7 (9-98)||(18116947-18117036)
chr7 (9-100)||(28407548-28407635)
chr7 (4-96)||(11216804-11216896)
[»] chr1 (15 HSPs)
chr1 (4-109)||(30370052-30370157)
chr1 (10-108)||(22024144-22024242)
chr1 (4-100)||(45324041-45324137)
chr1 (4-98)||(30054445-30054539)
chr1 (4-101)||(30850840-30850937)
chr1 (4-100)||(14498080-14498176)
chr1 (12-109)||(12025224-12025321)
chr1 (1-98)||(21090147-21090244)
chr1 (4-100)||(4573414-4573510)
chr1 (4-100)||(20014493-20014589)
chr1 (13-92)||(35371754-35371833)
chr1 (31-98)||(35618037-35618104)
chr1 (48-109)||(17015199-17015260)
chr1 (9-109)||(33762532-33762632)
chr1 (9-109)||(33763246-33763346)
[»] chr8 (20 HSPs)
chr8 (4-109)||(11404036-11404141)
chr8 (9-100)||(32296640-32296731)
chr8 (4-98)||(17095585-17095679)
chr8 (4-109)||(19723346-19723451)
chr8 (4-100)||(22711544-22711640)
chr8 (4-100)||(36261681-36261777)
chr8 (9-109)||(29767228-29767326)
chr8 (4-97)||(43288107-43288200)
chr8 (14-98)||(28739564-28739648)
chr8 (14-109)||(41553330-41553425)
chr8 (4-81)||(21355004-21355081)
chr8 (4-100)||(4840175-4840271)
chr8 (15-98)||(11909426-11909509)
chr8 (67-100)||(11610378-11610411)
chr8 (4-61)||(24475036-24475093)
chr8 (67-100)||(27879561-27879594)
chr8 (67-100)||(28019742-28019775)
chr8 (15-100)||(30682885-30682969)
chr8 (9-45)||(27881044-27881080)
chr8 (9-45)||(28021225-28021261)
[»] chr6 (7 HSPs)
chr6 (4-109)||(20685360-20685465)
chr6 (4-100)||(35163751-35163847)
chr6 (9-100)||(19686828-19686919)
chr6 (11-100)||(17948722-17948811)
chr6 (4-98)||(15070160-15070254)
chr6 (4-100)||(2711741-2711831)
chr6 (4-92)||(14505533-14505620)
[»] chr2 (21 HSPs)
chr2 (4-100)||(45136971-45137067)
chr2 (4-100)||(2754052-2754148)
chr2 (4-100)||(17136422-17136518)
chr2 (4-100)||(36836330-36836426)
chr2 (9-100)||(10745233-10745324)
chr2 (4-100)||(25987662-25987759)
chr2 (4-100)||(36380133-36380229)
chr2 (4-100)||(40156075-40156171)
chr2 (4-100)||(44650428-44650524)
chr2 (4-109)||(21637932-21638037)
chr2 (4-92)||(6672802-6672890)
chr2 (4-100)||(26690189-26690285)
chr2 (4-100)||(13047157-13047250)
chr2 (4-100)||(558440-558536)
chr2 (9-109)||(5039460-5039560)
chr2 (10-99)||(30372682-30372771)
chr2 (4-100)||(2357077-2357172)
chr2 (11-100)||(33066632-33066721)
chr2 (4-100)||(3200916-3201012)
chr2 (67-100)||(2098827-2098860)
chr2 (4-100)||(21487183-21487280)
[»] chr4 (16 HSPs)
chr4 (4-98)||(51066528-51066622)
chr4 (9-100)||(51713966-51714057)
chr4 (10-100)||(7173586-7173676)
chr4 (4-98)||(46494401-46494495)
chr4 (4-100)||(36192576-36192672)
chr4 (4-100)||(29576450-29576546)
chr4 (9-109)||(55231727-55231827)
chr4 (9-100)||(30970385-30970476)
chr4 (4-97)||(32139199-32139292)
chr4 (9-100)||(676768-676859)
chr4 (11-100)||(50905790-50905879)
chr4 (4-100)||(39863779-39863875)
chr4 (4-71)||(8740483-8740550)
chr4 (25-100)||(22304092-22304167)
chr4 (9-100)||(47626994-47627085)
chr4 (67-109)||(2570299-2570341)
[»] chr5 (4 HSPs)
chr5 (4-109)||(17064358-17064463)
chr5 (11-98)||(20983006-20983093)
chr5 (17-100)||(37976598-37976681)
chr5 (10-100)||(41910865-41910955)
[»] scaffold0021 (1 HSPs)
scaffold0021 (4-92)||(107700-107788)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 119 - 293
Target Start/End: Original strand, 47371199 - 47371373
Alignment:
Q  119 gtttataacatgttgataatatgtacaaatttgaaataaatctaaatttatttgatatagtgttgagatctatcaaaattaacgttttaaaatcttttat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47371199 gtttataacatgttgataatatgtacaaatttgaaataaatctaaatttatttgatatagtgttgagatctatcaaacttaacgttttaaaatcttttat 47371298  T
Q  219 tttatgatgttactcttgatgcaactcaacaatgtacaaaatgattttaatttatgcagagagagattaaaaaat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47371299 tttatgatgttactcttgatgcaactcaacaatgtacaaaatgattttaatttatgcagagagagattaaaaaat 47371373  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 8400890 - 8400986
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||    
T  8400890 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 8400986  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 50823733 - 50823829
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||    
T  50823733 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 50823829  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 50852127 - 50852031
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||    
T  50852127 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 50852031  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 35198805 - 35198896
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||||||||| ||||| |||||||||||||||  |||||||| ||| | ||| ||||||||||||||||||||||||||||||||||    
T  35198805 gggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaaatt 35198896  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 7417833 - 7417929
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| |||   ||| ||||||||| ||||||||||||||||||||||||    
T  7417833 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttcactgccttggactggggcaccatcccctcaccctaaaatt 7417929  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 22371826 - 22371730
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||  ||| | |||||| |||||| ||||||||||||||||||||||||    
T  22371826 ttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaagatcttccctgctttagactggggcaccatcccctcaccctaaaatt 22371730  T

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Target: chr3; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 22855922 - 22856018
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| ||||||||||||||   ||| |||| ||| | ||| ||||||||||||||||||||||||||||||||||    
T  22855922 ttggagggaggtaaatgtaattacctttgtaagtgctctttaagcccaaaggtcttccctgccttggactggagcaccatcccctcaccctaaaatt 22856018  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 55468034 - 55468129
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttg-gccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    |||| ||||||||||||||| ||||| ||||||||||||||| |||||||||| |||   ||| ||||||||| ||||||||||||||||||||||    
T  55468034 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagccccgaaggtcttctctgccttggactggggcaccatcccctcaccctaaaa 55468129  T

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Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 34824596 - 34824685
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    |||||||||||||||||| || |||||||||||||||  |||||||| ||| |  || ||||||||| ||||||||||||||||||||||    
T  34824596 gggaggtaaatgtaattatctttgtaagtgctctttgatcccgaaggtcttcccggccttggactggggcaccatcccctcaccctaaaa 34824685  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 37330692 - 37330608
Alignment:
Q  16 aaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||||||||||||| |||||||||||||||   ||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||    
T  37330692 aaatgtaattacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 37330608  T

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Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 30534987 - 30534903
Alignment:
Q  16 aaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||||||||||||| |||||||||||||||  |||||||  ||| | ||| ||||||||| | ||||||||||||||||||||||    
T  30534987 aaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggtaccatcccctcaccctaaaatt 30534903  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 52545361 - 52545452
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||||||||| ||| | |||||||  ||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||    
T  52545361 gggaggtaaatgtaaatacttttgtaagtagtctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 52545452  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 43334146 - 43334057
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    ||||||||||||||| ||| | |||||||||| ||||  |||||||| ||| | ||| ||||||||| | ||||||||||||||||||||    
T  43334146 gggaggtaaatgtaaatacttttgtaagtgctatttgagcccgaaggtcttccctgccttggactggggtaccatcccctcaccctaaaa 43334057  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 37454829 - 37454745
Alignment:
Q  16 aaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||| |||||||||||||||  |||||||| ||| | | | || || ||| ||||||||||||||||||||||||    
T  37454829 aaatataattacctttgtaagtgctctttgagcccgaaggtcttccctaccttagattggggcaccatcccctcaccctaaaatt 37454745  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 29635908 - 29636009
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcacc-atcccctcaccctaaaattaatgtaa 107  Q
    ||||||||||||||||||||| ||||||||||||||   |||||| | ||| | ||| ||||| ||| ||||| || ||||||| ||||||||  |||||    
T  29635908 gggaggtaaatgtaattacctttgtaagtgctctttaagcccgaatgtcttccctgccttggagtggggcaccaattccctcacgctaaaatttctgtaa 29636007  T
Q  108 cc 109  Q
    ||    
T  29636008 cc 29636009  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 19872572 - 19872484
Alignment:
Q  12 aggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||||||  ||||||||| ||||||| |||||||   ||||||| ||| | ||  ||||||||| |||||||||||||| |||||||||    
T  19872572 aggtaaaattaattacctttgtaagtactctttgaatccgaaggtcttccctgtcttggactggggcaccatcccctcatcctaaaatt 19872484  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 42876256 - 42876291
Alignment:
Q  10 ggaggtaaatgtaattacctgtgtaagtgctctttg 45  Q
    |||||||||||||||||||| |||||||||||||||    
T  42876256 ggaggtaaatgtaattacctttgtaagtgctctttg 42876291  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 25910736 - 25910658
Alignment:
Q  31 tgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaatgtaacc 109  Q
    |||||||||||||||   ||||||  ||| | ||| ||||||||  ||||||||||||||||||||||||  |||||||    
T  25910736 tgtaagtgctctttgagtccgaagatcttccctgccttggactgaggcaccatcccctcaccctaaaatttttgtaacc 25910658  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 358966 - 358934
Alignment:
Q  77 gcaccatcccctcaccctaaaattaatgtaacc 109  Q
    |||||||||||||||||||||||| ||||||||    
T  358966 gcaccatcccctcaccctaaaatttatgtaacc 358934  T

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Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 38265334 - 38265229
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaat 103  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| |||||||||||||||||||||||| ||    
T  38265334 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttat 38265235  T
Q  104 gtaacc 109  Q
    ||||||    
T  38265234 gtaacc 38265229  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 35109726 - 35109831
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaat 103  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||  |    
T  35109726 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattttt 35109825  T
Q  104 gtaacc 109  Q
    ||||||    
T  35109826 gtaacc 35109831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 37095307 - 37095211
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||    
T  37095307 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 37095211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 34721869 - 34721965
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||| | ||| ||||||| | ||||||||||||||||||||||||    
T  34721869 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggacttccctgccttggactcgggcaccatcccctcaccctaaaatt 34721965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 38405251 - 38405157
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    |||| |||||||||||||||||| || |||||||||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||    
T  38405251 ttggagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 38405157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 21577195 - 21577099
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||| ||||| |||||||||||||||   ||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||    
T  21577195 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 21577099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 41151207 - 41151301
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgt-gtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaa 97  Q
    |||| ||||||||||||||||||||| | ||||||||||||||  |||||||| ||| | ||| ||||||||| |||||||||||||||||||||    
T  41151207 ttggagggaggtaaatgtaattaccttttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaa 41151301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 16059445 - 16059356
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    ||||||||||||||||||||| |||||||||||| ||  |||||||| ||| | | | ||||||||| ||||||||||||||||||||||    
T  16059445 gggaggtaaatgtaattacctttgtaagtgctctctgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccctaaaa 16059356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 245361 - 245265
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| |||||||||||||||||| || |||||  ||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||    
T  245361 ttggagggaggtaaatgtaattatctttgtaaacgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 245265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 45278492 - 45278592
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaatgtaac 108  Q
    |||| ||||||||||||| || ||||||||||||||   |||||| | ||| | ||| ||||||||||||||||||||||||||||||||||  ||||||    
T  45278492 gggaagtaaatgtaattatctttgtaagtgctctttaaacccgaatgtcttccctgccttggactggagcaccatcccctcaccctaaaatttttgtaac 45278591  T
Q  109 c 109  Q
    |    
T  45278592 c 45278592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 12472156 - 12472249
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaa 97  Q
    |||| ||||||||||| ||||||||| |||||||||||||||  | |||||| ||| | ||  ||||||||| | |||||||||||||||||||    
T  12472156 ttggagggaggtaaatataattacctttgtaagtgctctttgagcacgaaggtcttccctgtcttggactggggtaccatcccctcaccctaaa 12472249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 18117036 - 18116947
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    ||||||||||||||||||||| |||| ||||||||||    |||||  ||| | ||| ||||||||| ||||||||||||||||||||||    
T  18117036 gggaggtaaatgtaattacctttgtaggtgctctttgaggtcgaagatcttccctgccttggactggggcaccatcccctcaccctaaaa 18116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 28407548 - 28407635
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||||||||| ||| | |||||||||||||||  ||||||||    ||| || ||||| ||| ||||||||||||||||||||||||    
T  28407548 gggaggtaaatgtaaatacttttgtaagtgctctttgagcccgaagg----tcaagccttggattggggcaccatcccctcaccctaaaatt 28407635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 11216804 - 11216896
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaa 96  Q
    |||| ||||||||||||||| ||||| |||||||||||||||  |||||||| |||   | ||||||||| | ||| ||| ||||||||||||    
T  11216804 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttctctactttggactagggcatcattccctcaccctaa 11216896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 30370157 - 30370052
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaat 103  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| |||||||||||||||| ||||||| ||    
T  30370157 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccttaaaattcat 30370058  T
Q  104 gtaacc 109  Q
    ||||||    
T  30370057 gtaacc 30370052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 22024144 - 22024242
Alignment:
Q  10 ggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaatgtaac 108  Q
    |||||||||||||||||||| |||||||||||||||  |||||||| |||   ||| ||||||||| |||||||||||||||||||||||| |||||||    
T  22024144 ggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttctctgccttggactggggcaccatcccctcaccctaaaatttatgtaac 22024242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 45324041 - 45324137
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||| ||||| ||||||||||| |||  |||||||| ||| | ||||||||||||| ||||||||||||||||||||||||    
T  45324041 ttggagggaggtaaatgtaaatacctttgtaagtgctccttgagcccgaaggtcttccctgctttggactggggcaccatcccctcaccctaaaatt 45324137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 30054539 - 30054445
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    |||| ||||||||||||||||||||| ||||| |||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||    
T  30054539 ttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 30054445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 30850937 - 30850840
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatta 101  Q
    |||| ||||||||||| ||||| ||| |||||||||||||||  |||||||| ||||| ||  ||||||||| |||||||||||||||||||||||||    
T  30850937 ttggagggaggtaaatataattgcctttgtaagtgctctttgaacccgaaggtctttcctgtcttggactggggcaccatcccctcaccctaaaatta 30850840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 14498176 - 14498080
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||   || |||| ||| | ||| ||||||||| || |||||||||||||||||||||    
T  14498176 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagaccaaaggtcttccctgccttggactggggcgccatcccctcaccctaaaatt 14498080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 12025224 - 12025321
Alignment:
Q  12 aggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaatgtaacc 109  Q
    |||||||||||||||||| ||||||| || ||||  |||||||| ||| | ||| ||||||||| |||||| |||||||||||||||||  |||||||    
T  12025224 aggtaaatgtaattacctttgtaagtactatttgagcccgaaggtcttccctgccttggactggggcaccaccccctcaccctaaaatttttgtaacc 12025321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 21090147 - 21090244
Alignment:
Q  1 ccgttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    ||||||| ||||||||||||||| ||| | ||||| |||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||| ||||||    
T  21090147 ccgttggagggaggtaaatgtaaatacatttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaaaa 21090244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 4573414 - 4573510
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||| ||||| |||||||||||||||  | |||||| ||| | || |||||||||  |||| |||||||||||||||||||    
T  4573414 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgttttggactgaggcactatcccctcaccctaaaatt 4573510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 20014493 - 20014589
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||| | ||||| |||||||||  || ||||| ||| | ||| ||||||||  ||||||||||||||||||||||||    
T  20014493 ttggagggaggtaaatgtaattacatttgtaaatgctctttgagcctgaaggtcttccctgccttggactgaggcaccatcccctcaccctaaaatt 20014589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 35371833 - 35371754
Alignment:
Q  13 ggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcacc 92  Q
    ||||||||||||||||| |||||||||||||||  |||||||  ||| | ||| ||||||||| ||||||||||||||||    
T  35371833 ggtaaatgtaattacctttgtaagtgctctttgagcccgaagttcttccctgccttggactggggcaccatcccctcacc 35371754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 35618037 - 35618104
Alignment:
Q  31 tgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    |||||||||||||||  |||||||| ||| | ||||||||||||| | ||||||||||||||||||||    
T  35618037 tgtaagtgctctttgagcccgaaggtcttccttgctttggactggggtaccatcccctcaccctaaaa 35618104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 17015199 - 17015260
Alignment:
Q  48 cccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaatgtaacc 109  Q
    |||||||| ||| | ||||||||||||| |||||||||||||| ||||||||| ||||||||    
T  17015199 cccgaaggtcttccctgctttggactggggcaccatcccctcatcctaaaatttatgtaacc 17015260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 33762632 - 33762532
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaatgtaac 108  Q
    |||||| |||||||||||||| |||||||| | ||||  |||||| |  || | ||| ||||||||| ||| ||||||||||||||||||||  ||||||    
T  33762632 gggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttggactggggcatcatcccctcaccctaaaatttttgtaac 33762533  T
Q  109 c 109  Q
    |    
T  33762532 c 33762532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 33763346 - 33763246
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaatgtaac 108  Q
    |||||| |||||||||||||| |||||||| | ||||  |||||| |  || | ||| ||| ||||| ||| ||||||||||||||||||||  ||||||    
T  33763346 gggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttgaactggggcatcatcccctcaccctaaaatttctgtaac 33763247  T
Q  109 c 109  Q
    |    
T  33763246 c 33763246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 11404036 - 11404141
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaat 103  Q
    |||| ||||||||||||||| ||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||  |    
T  11404036 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattttt 11404135  T
Q  104 gtaacc 109  Q
    ||||||    
T  11404136 gtaacc 11404141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 32296731 - 32296640
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||| ||| | ||| ||||| ||| ||||||||||||||||||||||||    
T  32296731 gggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccatcccctcaccctaaaatt 32296640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 17095585 - 17095679
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    |||| ||||||||||||||||||||| ||||| |||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||    
T  17095585 ttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 17095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 19723346 - 19723451
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaat 103  Q
    |||| ||||||||||||||||||||| |||||||||||||||  ||| |||  ||| | ||| ||||||||| ||||||||||||||||||||||||  |    
T  19723346 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccaaagatcttccctgccttggactggggcaccatcccctcaccctaaaattttt 19723445  T
Q  104 gtaacc 109  Q
    ||||||    
T  19723446 gtaacc 19723451  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 22711544 - 22711640
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||| ||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| |||||||||||||| |||||||||    
T  22711544 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccttgccttggactggggcaccatcccctcatcctaaaatt 22711640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 36261681 - 36261777
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||  ||| | ||| ||| ||||| |||||||||||||||| |||||||    
T  36261681 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttgaactggggcaccatcccctcaccttaaaatt 36261777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 29767228 - 29767326
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaatgtaac 108  Q
    |||||||||||  |||||||| |||||||| ||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||  ||||||    
T  29767228 gggaggtaaat--aattacctttgtaagtgttctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatttttgtaac 29767325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 43288107 - 43288200
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaa 97  Q
    |||| ||||||||||||||||||||| ||||| || | ||||   ||||||| ||| | ||| |||||||||||||||||||||||||||||||    
T  43288107 ttggagggaggtaaatgtaattacctttgtaattgatttttgagtccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaa 43288200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 28739648 - 28739564
Alignment:
Q  14 gtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    |||||||||| ||||| |||||||||||||||  |||||||| ||| | | | |||||||| |||||||||||||||||||||||    
T  28739648 gtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactgcagcaccatcccctcaccctaaaa 28739564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 41553330 - 41553425
Alignment:
Q  14 gtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaatgtaacc 109  Q
    |||||||||| ||||| |||||||| ||||||  | |||||| ||| | ||| || |||||||||||||||||||||||||||||||  |||||||    
T  41553330 gtaaatgtaaatacctttgtaagtgttctttgagctcgaaggtcttccctgccttagactggagcaccatcccctcaccctaaaatttttgtaacc 41553425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 21355081 - 21355004
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcacc 81  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| |||||    
T  21355081 ttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcacc 21355004  T

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Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 4840175 - 4840271
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||| ||||||  |||||||||||||||   || |||| ||| | ||| ||||||| | ||||||||||||||||||||||||    
T  4840175 ttggagggaggtaaatgtcattaccattgtaagtgctctttgagtccaaaggtcttccctgccttggactagggcaccatcccctcaccctaaaatt 4840271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 11909509 - 11909426
Alignment:
Q  15 taaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    ||||||||| ||||| | |||||||||||||  | |||||| ||| | ||| ||||||||| ||||||||||||||||||||||    
T  11909509 taaatgtaaatacctttctaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 11909426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 11610378 - 11610411
Alignment:
Q  67 ttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||| ||||||||||||||||||||||||    
T  11610378 ttggactggggcaccatcccctcaccctaaaatt 11610411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 24475093 - 24475036
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttc 61  Q
    |||| ||||||||||||||| ||||| |||||||| ||||||  |||||||| |||||    
T  24475093 ttggagggaggtaaatgtaaatacctttgtaagtgttctttgagcccgaaggtctttc 24475036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 27879594 - 27879561
Alignment:
Q  67 ttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||| ||||||||||||||||||||||||    
T  27879594 ttggactggggcaccatcccctcaccctaaaatt 27879561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 28019775 - 28019742
Alignment:
Q  67 ttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||| ||||||||||||||||||||||||    
T  28019775 ttggactggggcaccatcccctcaccctaaaatt 28019742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 30682885 - 30682969
Alignment:
Q  15 taaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||| ||| | |||||||| ||||||  |||||||  ||| | ||| ||||||||| |||||||||||||||| |||||||    
T  30682885 taaatgtaaatacttttgtaagtgttctttgagcccgaagatcttccctgccttggactgg-gcaccatcccctcaccttaaaatt 30682969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 27881080 - 27881044
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttg 45  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  27881080 gggaggtaaatgtaaatacctttgtaagtgctctttg 27881044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 28021261 - 28021225
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttg 45  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  28021261 gggaggtaaatgtaaatacctttgtaagtgctctttg 28021225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 20685360 - 20685465
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaat 103  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| |||||||||| |||||||||||||  |    
T  20685360 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcaccctaaaattttt 20685459  T
Q  104 gtaacc 109  Q
    ||||||    
T  20685460 gtaacc 20685465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 35163847 - 35163751
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||| ||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||    
T  35163847 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 35163751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 19686919 - 19686828
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||||||||||||||| |||||||||||||||  |||||||  ||||| | | || |||||| ||| ||||||||||||||||||||    
T  19686919 gggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatctttcctcccttagactggggcatcatcccctcaccctaaaatt 19686828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 17948722 - 17948811
Alignment:
Q  11 gaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||||||| ||||| |||||||||||||||  |||||||| ||| | ||  |||||||||  ||||||||||||||| |||||||    
T  17948722 gaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactgggacaccatcccctcaccttaaaatt 17948811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 15070160 - 15070254
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    |||| ||||||||||| ||||||| | |||||||| || |||  |||||||| ||| | ||| || |||||| ||||||||||||||||| ||||    
T  15070160 ttggagggaggtaaatataattacatttgtaagtgttcattgagcccgaaggtcttccctgccttagactggggcaccatcccctcacccaaaaa 15070254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 2711831 - 2711741
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||| ||||| |||||||||||||||  | |||||| ||| | ||| |||||      |||||||||||||||||||||||    
T  2711831 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgccttgga------caccatcccctcaccctaaaatt 2711741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 14505620 - 14505533
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcacc 92  Q
    |||| |||||||||||||||| |||| ||||| |  ||||||| | |||||  ||| | ||| ||||||||| ||||||||||||||||    
T  14505620 ttggagggaggtaaatgtaat-acctttgtaaatattctttgggcgcgaagatcttccgtgccttggactggggcaccatcccctcacc 14505533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 45137067 - 45136971
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| |||||||||| |||||||||||||    
T  45137067 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcaccctaaaatt 45136971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 2754148 - 2754052
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||| ||||| |||||||||||||||  | |||||| ||| | ||| ||||||||| ||||||||||||||||||||||||    
T  2754148 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 2754052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 17136422 - 17136518
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||| ||||| |||||||||||||||  |||||||| ||| |  || ||||||||| ||||||||||||||||||||||||    
T  17136422 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccccgccttggactggggcaccatcccctcaccctaaaatt 17136518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 36836426 - 36836330
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||  ||| | ||| ||||||||| |||||||||||||||| |||||||    
T  36836426 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggcaccatcccctcaccttaaaatt 36836330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 10745324 - 10745233
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||||||||||||||||| || |||||||||||||||  ||||||||  || | ||| ||||||||| ||||||||||||||||||||||||    
T  10745324 gggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtattccctgccttggactggggcaccatcccctcaccctaaaatt 10745233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 25987759 - 25987662
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggcttt-catgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||   ||||||| |||| | ||| |||| |||| ||||||||||||||||||||||||    
T  25987759 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaaggtctttccctgccttggtctggggcaccatcccctcaccctaaaatt 25987662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 36380229 - 36380133
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||| ||| |||||||||||||||  |||||||| ||| | | | ||||||||  ||||||||||||||||||||||||    
T  36380229 ttggagggaggtaaatgtaattccctttgtaagtgctctttgagcccgaaggtcttccctaccttggactgaggcaccatcccctcaccctaaaatt 36380133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 40156075 - 40156171
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||| | | | ||| ||||| |||||||||||||||| |||||||    
T  40156075 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctaccttgaactggggcaccatcccctcaccataaaatt 40156171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 44650428 - 44650524
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||||||||||   ||||||  ||| | ||| |||||| || ||||||||||||||||||||||||    
T  44650428 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaagatcttccctgccttggaccggggcaccatcccctcaccctaaaatt 44650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 21637932 - 21638037
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaat 103  Q
    |||| ||||||||||||||| ||||| |||||||||||||||  ||| |||| |||   ||| ||||||| | ||||||||||||||||||||||||  |    
T  21637932 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccaaaggtcttctctgccttggactagggcaccatcccctcaccctaaaattttt 21638031  T
Q  104 gtaacc 109  Q
    ||||||    
T  21638032 gtaacc 21638037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 6672890 - 6672802
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcacc 92  Q
    |||| ||||||||||||||||||||| |||| | ||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||    
T  6672890 ttggagggaggtaaatgtaattacctttgtacgcgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacc 6672802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 26690189 - 26690285
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    |||||| ||| | ||| ||||||||  ||||||||||||||||||||||||    
T  26690189 ttggagggaggtaaatgtaattacctttgtaagtgatctttgtgttcgaaggtcttccctgccttggactgaggcaccatcccctcaccctaaaatt 26690285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 13047250 - 13047157
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||| |||||||||   |||||||||||||  ||| |||  ||| | ||| ||||||||||||||||||||||||||||||||||    
T  13047250 ttggagggaggtaaatataattacct---taagtgctctttgagcccaaagatcttccctgccttggactggagcaccatcccctcaccctaaaatt 13047157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 558536 - 558440
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||| | |||||||||||||||  |  ||||| ||| | | | ||||| ||| ||||||||||||||||||||||||    
T  558536 ttggagggaggtaaatgtaattacttttgtaagtgctctttgagctagaaggtcttcccttccttggaatggggcaccatcccctcaccctaaaatt 558440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 5039460 - 5039560
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaatgtaac 108  Q
    |||||||||| |||||||||| |||||||||||||||  |||||||  ||| | | | ||||||| | ||||||||||||||| ||||||||  ||||||    
T  5039460 gggaggtaaacgtaattacctttgtaagtgctctttgagcccgaagatcttccctaccttggactagggcaccatcccctcactctaaaatttttgtaac 5039559  T
Q  109 c 109  Q
    |    
T  5039560 c 5039560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 30372771 - 30372682
Alignment:
Q  10 ggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaat 99  Q
    |||||||||||||| || || ||| |||||||||||  |||||||| ||| ||||| ||| ||||| | ||||| |||||||||||||||    
T  30372771 ggaggtaaatgtaaatatctttgttagtgctctttgagcccgaaggtcttccatgccttgaactggggtaccataccctcaccctaaaat 30372682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 2357172 - 2357077
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||| ||||  ||||| |||| ||||    |||||| ||| ||||| ||||||||| ||||||||||||||||||||||||    
T  2357172 ttggagggaggtaaatgtaaataccattgtaaatgct-tttgagttcgaaggtcttccatgccttggactggggcaccatcccctcaccctaaaatt 2357077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 33066632 - 33066721
Alignment:
Q  11 gaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||||||| || || |||||||||||||||  || ||||| |||   | | ||||||||| |||||||||||||| |||||||||    
T  33066632 gaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttctctaccttggactggggcaccatcccctcatcctaaaatt 33066721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 3200916 - 3201012
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||||| |||||||| ||||||  || ||||  |||   ||| || |||||| |||||||| |||| ||||||||||    
T  3200916 ttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaagatcttctctgccttagactggggcaccatctcctcgccctaaaatt 3201012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 2098860 - 2098827
Alignment:
Q  67 ttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||| ||||||||||||||||||||||||    
T  2098860 ttggactggggcaccatcccctcaccctaaaatt 2098827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 21487183 - 21487280
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccat-cccctcaccctaaaatt 100  Q
    |||| ||||||||||||||| ||  | |||||||||||||||  |||||| | ||| | ||| || |||||| ||||||| ||||||| |||||||||    
T  21487183 ttggagggaggtaaatgtaaatatttttgtaagtgctctttgagcccgaaagtcttccctgccttagactggggcaccatccccctcatcctaaaatt 21487280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 51066528 - 51066622
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    |||| ||||||||||| ||||||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||    
T  51066528 ttggagggaggtaaatataattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 51066622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 51714057 - 51713966
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||||| ||| ||||| |||||||||||||||  |||||||| ||| | ||||||| ||||| ||||||||||||||||||||||||    
T  51714057 gggaggtaaatataaatacctttgtaagtgctctttgagcccgaaggtcttccctgctttgaactggggcaccatcccctcaccctaaaatt 51713966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 7173676 - 7173586
Alignment:
Q  10 ggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||||||||||| | ||||| |||||||||||||||  |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||    
T  7173676 ggaggtaaatgtcaatacctttgtaagtgctctttgagcccgaaggtcttccctgcgttggactggggcaccatcccctcaccctaaaatt 7173586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 46494495 - 46494401
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    |||| ||||||||||||||| ||||| |||||||||||||||  |||||||| ||| | | | ||||||||| ||||||||||||||||||||||    
T  46494495 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccctaaaa 46494401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 36192576 - 36192672
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||||||| | ||||| |||||||||  |||||||| ||| | | | ||||||||| ||||||||||||||||||||||||    
T  36192576 ttggagggaggtaaatgtaattacttttgtaaatgctctttgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccctaaaatt 36192672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 29576450 - 29576546
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| ||||||||||||||| || || |||||||||||||||  |||||||| ||| | ||| ||||| ||| |||||| |||||||||||||||||    
T  29576450 ttggagggaggtaaatgtaaataactttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccaccccctcaccctaaaatt 29576546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 55231727 - 55231827
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaatgtaac 108  Q
    ||||||||||||||| ||| | |||||||||||||||  || ||| | ||| | ||| ||||||||| ||||||||||||||||||||||||  ||||||    
T  55231727 gggaggtaaatgtaaatacttttgtaagtgctctttgagcctgaatgtcttccctgccttggactggggcaccatcccctcaccctaaaatttttgtaac 55231826  T
Q  109 c 109  Q
    |    
T  55231827 c 55231827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 30970476 - 30970385
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||||||||| ||||| |||||||||||||||  | |||||| ||| | | | || |||||| ||||||||||||||||||||||||    
T  30970476 gggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctaccttagactggggcaccatcccctcaccctaaaatt 30970385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 32139199 - 32139292
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaa 97  Q
    |||| ||||||||||||||||||||| |||||||| ||||||  || ||||| |||   ||| ||||||||| |||||||||| ||||||||||    
T  32139199 ttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaaggtcttctctgccttggactggggcaccatcccttcaccctaaa 32139292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 676768 - 676859
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||| ||||| ||||| |||||||||||||||  |||||||| ||| | ||| |||||||| | ||||||||||| ||| |||||||    
T  676768 gggaggtaagtgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactgtaacaccatccccttaccttaaaatt 676859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 50905790 - 50905879
Alignment:
Q  11 gaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||||||||||||||| || |||| ||||||||||   ||||||| ||| ||||| ||| ||||| |||||||||  |||||||||||||    
T  50905790 gaggtaaatgtaattatctttgtaggtgctctttgagtccgaaggtcttccatgccttgaactggggcaccatcctttcaccctaaaatt 50905879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 39863875 - 39863779
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    |||| |||| |||||||||||||||| |||||||||||||||  |||||||| |||   | | ||||||||   ||| |||||||||||||||||||    
T  39863875 ttggagggaagtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttctctaccttggactgagacactatcccctcaccctaaaatt 39863779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 8740483 - 8740550
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttgga 71  Q
    |||| ||||||||||||||| ||||| |||||||||||||||  |||||||| ||| ||||| |||||    
T  8740483 ttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccatgccttgga 8740550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 22304167 - 22304092
Alignment:
Q  25 tacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||| |||||||||||||||  |||||||| ||| | | | ||||||||| ||||||||| ||||||||||||||    
T  22304167 tacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcctctcaccctaaaatt 22304092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 47627085 - 47626994
Alignment:
Q  9 gggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||||||||| ||||| | ||| | |||||||  | |||||| ||| | ||| |||||||||| ||||||| |||||||||||||||    
T  47627085 gggaggtaaatgtaaatacctctataaatactctttgaactcgaaggtcttccctgccttggactggaacaccatctcctcaccctaaaatt 47626994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 2570299 - 2570341
Alignment:
Q  67 ttggactggagcaccatcccctcaccctaaaattaatgtaacc 109  Q
    ||||||||| ||||||||||||||||||||||||  |||||||    
T  2570299 ttggactggggcaccatcccctcaccctaaaatttttgtaacc 2570341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 17064358 - 17064463
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaattaat 103  Q
    |||| ||||||||||||||| ||||| ||||||||||||||   |||||||| ||| | ||| ||||||||| ||||||||||||||||||||||||  |    
T  17064358 ttggagggaggtaaatgtaaatacctttgtaagtgctctttaagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaattttt 17064457  T
Q  104 gtaacc 109  Q
    ||||||    
T  17064458 gtaacc 17064463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 20983093 - 20983006
Alignment:
Q  11 gaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaa 98  Q
    |||||||||| |||||| | |||||||||||||||  |||||| | ||| | ||| ||||||||| ||||||||||||||||||||||    
T  20983093 gaggtaaatgcaattacatttgtaagtgctctttgagcccgaaagtcttccctgccttggactggggcaccatcccctcaccctaaaa 20983006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 37976598 - 37976681
Alignment:
Q  17 aatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||| ||||| |||||||||| ||||  ||||||||  |||| ||| ||| ||||| ||||||||||||||||||||||||    
T  37976598 aatgtaaatacctttgtaagtgctatttgagcccgaaggtttttcctgccttgaactggggcaccatcccctcaccctaaaatt 37976681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 41910865 - 41910955
Alignment:
Q  10 ggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcaccctaaaatt 100  Q
    ||||||||||||||||| || |||||||| ||||||  |||||| | |||   ||| ||| ||||| |||||||||||||||| |||||||    
T  41910865 ggaggtaaatgtaattaactttgtaagtgttctttgagcccgaatgtcttctctgccttgaactggggcaccatcccctcaccttaaaatt 41910955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 107788 - 107700
Alignment:
Q  4 ttggggggaggtaaatgtaattacctgtgtaagtgctctttggccccgaagggctttcatgctttggactggagcaccatcccctcacc 92  Q
    |||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||  | ||| ||||||||| ||||||||||||||||    
T  107788 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctaccctgccttggactggggcaccatcccctcacc 107700  T

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