View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7021_low_4 (Length: 278)
Name: NF7021_low_4
Description: NF7021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7021_low_4 |
 | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0304 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
| | |
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| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0319 (1 HSPs) |
| | |
|
| [»] scaffold0107 (2 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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| [»] scaffold0001 (2 HSPs) |
| | |
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| [»] scaffold0241 (1 HSPs) |
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| [»] scaffold0282 (1 HSPs) |
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| [»] scaffold0023 (3 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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| [»] scaffold0108 (1 HSPs) |
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| [»] scaffold1900 (1 HSPs) |
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| [»] scaffold0046 (1 HSPs) |
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|
| [»] scaffold0239 (1 HSPs) |
| | |
|
| [»] scaffold0100 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 266
Target Start/End: Complemental strand, 10786957 - 10786697
Alignment:
| Q |
7 |
gcttcggccaacttgtgtagggtcttccatcgaatagtcattttcttt-ttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttat |
105 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||||| || |||||||||| || |||||||||||||||||||||||||||| ||||||||| | | ||||| |
|
|
| T |
10786957 |
gctttggccaacttgcgtagggttttccatcgaaaagccattttctttcttatagcatttcttttgtaatggtttacttttgcgctcttttagagcttat |
10786858 |
T |
|
| Q |
106 |
tttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagtttattttcgaattactcttgtatgattttaatttcttgcaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10786857 |
tttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttatgtttattttcgaattactcttgtatgattttaatttcttgcaat |
10786758 |
T |
|
| Q |
206 |
gttggtttatacttcttcaagtattttccatttattcgcaaaatccttcaatcgtcgttca |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10786757 |
gttggtttatacttcttcaagtattttccatttattcgcaaaatccttcgatcgtcgttca |
10786697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 7360834 - 7361097
Alignment:
| Q |
3 |
tttggcttcggccaacttgtgtagggtcttccatcgaatagtcattttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaact |
102 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||| | | || |
|
|
| T |
7360834 |
tttggctttggccaacttatgtaggactttccatcgaagaatcattttctgtttgtagcatttcttttgtaatggtttactt-cgcgctcttttagagct |
7360932 |
T |
|
| Q |
103 |
tattttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagtttat--tttcgaattactcttgtatgattttaatttctt |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| | |
|
|
| T |
7360933 |
tattttgaaattttgtgtaaaccgcccattagttggctt-aatgaaatgctatgtttgggtttatcttttcgaattactcttgtatgattctaatttcct |
7361031 |
T |
|
| Q |
201 |
gcaatgttggtttatacttcttcaagtattttccatttattcgcaaaatccttcaatcgtcgttca |
266 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
7361032 |
gcaacgttggtttatactttttcaagtactttccatttattcgtagaatccttcgatcgtcgttca |
7361097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 14688832 - 14689095
Alignment:
| Q |
3 |
tttggcttcggccaacttgtgtagggtcttccatcgaatagtcattttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaact |
102 |
Q |
| |
|
|||||||| ||||||||| |||||| | |||||||||| | ||||||||| |||||||||||||||| ||||||||||||||| | ||||||| | | | |
|
|
| T |
14688832 |
tttggctttggccaacttatgtaggtttttccatcgaagaatcattttctgtttgtagcatttcttt-gtaatggtttacttt-gtgctctttttagagt |
14688929 |
T |
|
| Q |
103 |
t-attttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagttta--ttttcgaattactcttgtatgattttaatttct |
199 |
Q |
| |
|
| ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
14688930 |
ttattttgaaattttgtgtaaaccgcccatcagttggc-cccatgaaatgctatgtttgaatttatcttttcgaattactcttgtatgattctaatttcc |
14689028 |
T |
|
| Q |
200 |
tgcaatgttggtttatacttcttcaagtattttccatttattcgcaaaatccttcaatcgtcgttca |
266 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||||| |
|
|
| T |
14689029 |
tgcaacgttggtttatactttttcaagtattttccatttattcgtaaaattcttcgatcatcgttca |
14689095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 242
Target Start/End: Complemental strand, 10157671 - 10157474
Alignment:
| Q |
48 |
tttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaa----actttgtgtaaaccgcccattagttggcttta |
143 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||| | | | |||||||| | |||||||||||||||||||||||||| ||| |
|
|
| T |
10157671 |
tttccttttgtagcatttcttttgtaatggtttacttt-gcgctcttt-agagcccattttgaagtttattttgtgtaaaccgcccattagttggcctta |
10157574 |
T |
|
| Q |
144 |
atgaaatgctatgtttgag--tttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttatt |
241 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
10157573 |
-tgaaatgccatgtttgaacttttcttttcgaattactcttgtatgatcttaatttcttgtaatgtcggtttatactttttcaagtactttccgtttatt |
10157475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 13033779 - 13033671
Alignment:
| Q |
145 |
tgaaatgctatgtttgagtttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcgc |
244 |
Q |
| |
|
|||||||| |||||| | ||| ||||||||||||||||| || || ||||||||||| | | || |||||||| || ||||| |||||||||||||| |
|
|
| T |
13033779 |
tgaaatgccatgttttaatttcttttcgaattactcttgcataatcttaatttcttgtagcatcggcttatacttttttaagtactttccatttattcgt |
13033680 |
T |
|
| Q |
245 |
aaaatcctt |
253 |
Q |
| |
|
|| |||||| |
|
|
| T |
13033679 |
aagatcctt |
13033671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 7e-89; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 41375785 - 41376049
Alignment:
| Q |
3 |
tttggcttcggccaacttgtgtagggtcttccatcgaatagtcattttctttttg-tagcatttcttttgtaatggtttactttcgcgctctttcaaaac |
101 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||||||||||||||| |||||||| | | | |
|
|
| T |
41375785 |
tttggctttggccaacttgtgtagggttttccatcgaaaaaccattttcttttttatagcatttcttttgtaatggtttacttttgcgctcttctagagc |
41375884 |
T |
|
| Q |
102 |
ttattttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagtttatttt-cgaattactcttgtatgattttaatttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
41375885 |
ttattttgaaactttgtgtaaaccgcccattagttggcct-aatggaatgctatgtttgagtttatttttcgaattactcttgtatgattttaatttcct |
41375983 |
T |
|
| Q |
201 |
gcaatgttggtttatacttcttcaagtattttccatttattcgcaaaatccttcaatcgtcgttca |
266 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
41375984 |
gcaatgttggtctatactttttcaagtattttccatttattcgtaaaatccttcgatcgtcattca |
41376049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 254
Target Start/End: Original strand, 22800218 - 22800433
Alignment:
| Q |
47 |
ttttctttttgtagcatttctttt-gtaatggtttactttcgcgctctttcaaaacttattttgaa---ac-tttgtgtaaaccgcccattagttggctt |
141 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||| | | | ||||||||| || ||| |||||||||||||| ||||||| | |
|
|
| T |
22800218 |
ttttctttttgtagcatttctttttgtaatggtttacttt-gcgctctt--agagcctattttgaagacacatttatgtaaaccgcccatcagttggcct |
22800314 |
T |
|
| Q |
142 |
ta-----atgaaatgctatgtttga-gtttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttcca |
235 |
Q |
| |
|
| ||||||||||||| || | |||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||| |
|
|
| T |
22800315 |
tcttaatatgaaatgctatgcttaaagtttcttttcgaattactcttgcatgattttaatttcttgtaatgtcggtttatactttttcaagtactttccg |
22800414 |
T |
|
| Q |
236 |
tttattcgcaaaatccttc |
254 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
22800415 |
tttattcgcaagatccttc |
22800433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 22080779 - 22080697
Alignment:
| Q |
1 |
tttttggcttcggccaacttgtgtagggtcttccatcgaatagtcattttctttttgtagcatttcttttgtaatggtttact |
83 |
Q |
| |
|
||||||| || ||||| ||| ||||||| |||||||||| | ||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
22080779 |
tttttggatttggccagcttatgtagggctttccatcgaagaatcattttctgtttgtagcatttcttttgtagtggtttact |
22080697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 22689764 - 22689860
Alignment:
| Q |
144 |
atgaaatgctatgtttgagtttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttat |
240 |
Q |
| |
|
||||||||| ||||| | ||| ||||||||||||||||| || || ||||| ||||| | | | || |||||||| |||||||| ||||| ||||| |
|
|
| T |
22689764 |
atgaaatgccatgttccaatttcttttcgaattactcttgcataatcttaatctcttgtagtatcggcttatactttttcaagtactttccgtttat |
22689860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 3 - 266
Target Start/End: Complemental strand, 1729779 - 1729514
Alignment:
| Q |
3 |
tttggcttcggccaacttgtgtagggtcttccatcgaatagtcattttctttttg-tagcatttcttt-tgtaatggtttactttcgcgctctttcaaaa |
100 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||| || | |||||||||||| |||||||| ||| | |||||||||||||| |||||||| | | |
|
|
| T |
1729779 |
tttggctttggccaacttgcgtagggttttccatcaaaaaaccattttcttttttatagcatttttttctataatggtttacttttgcgctcttctagag |
1729680 |
T |
|
| Q |
101 |
cttattttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagtttattttc-gaattactcttgtatgattttaatttct |
199 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1729679 |
cttattttgaaactttgtgtaaaccacccattagttggcct-aatggaatgctatgtttgagtttattttttgaattactcttgtatgattttaatttcc |
1729581 |
T |
|
| Q |
200 |
tgcaatgttggtttatacttcttcaagtattttccatttattcgcaaaatccttcaatcgtcgttca |
266 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
1729580 |
tgcaatgttggtctatactttttcaagtattttccatttattcgtaaaatccttcgatcgtcgttca |
1729514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 22339123 - 22339225
Alignment:
| Q |
144 |
atgaaatgctatgtttgagtttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcg |
243 |
Q |
| |
|
||||||||||| | || | ||| |||||||| ||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| |||| |||||||| |
|
|
| T |
22339123 |
atgaaatgctacgcttaaatttcctttcgaatcactcttgcatgattttaatttcttgtaatgtcggtttatactttttcaagtactttctgtttattcg |
22339222 |
T |
|
| Q |
244 |
caa |
246 |
Q |
| |
|
||| |
|
|
| T |
22339223 |
caa |
22339225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 14329363 - 14329627
Alignment:
| Q |
3 |
tttggcttcggccaacttgtgtagggtcttccatcgaatagtcattttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaa-c |
101 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||||||| | ||||||||| ||||||||||||||||||||| ||||||||| |||||||||| | | | |
|
|
| T |
14329363 |
tttggctttggccaacttatgtagggatctccatcgaagaatcattttctgtttgtagcatttcttttgtaacggtttactt-cgcgctctttttagagc |
14329461 |
T |
|
| Q |
102 |
ttattttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagtttat--tttcgaattactcttgtatgattttaatttct |
199 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||| |||||| | ||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
14329462 |
ctatttttaaattatgtgtaaaccgcccattagctggcttca-tgaaatgctatatttgagtctatcttttcgaattactcttgtatgattctaatttcc |
14329560 |
T |
|
| Q |
200 |
tgcaatgttggtttatacttcttcaagtattttccatttattcgcaaaatccttcaatcgtcgttca |
266 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
14329561 |
tgcaacgttggtttatactttttcaagtactttccatttattcgtaaaatccttcgatcgtcgttca |
14329627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 48 - 253
Target Start/End: Original strand, 18167062 - 18167271
Alignment:
| Q |
48 |
tttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaaac----tttgtgtaaaccgcccattagttggcttta |
143 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||| | | || |||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
18167062 |
tttctgtttgtagcatttcttttgtaatggtttacttt-gcgctcttttagagctcattttgaagtcttttttgtgtaaaccgcccattagttggcctta |
18167160 |
T |
|
| Q |
144 |
atgaaatgctatgtttgagtttat--tttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttatt |
241 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||||||||||| ||| ||||||||||| || || |||||||||||||||||||| ||||| |||||| |
|
|
| T |
18167161 |
-tgaaatgctatgtttgaatttgtcttttcgaattactcttgtacgatcttaatttcttgtaacgtcggtttatacttcttcaagtactttccgtttatt |
18167259 |
T |
|
| Q |
242 |
cgcaaaatcctt |
253 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
18167260 |
cgtaaaatcctt |
18167271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 14159674 - 14159712
Alignment:
| Q |
167 |
ttttcgaattactcttgtatgattttaatttcttgcaat |
205 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
14159674 |
ttttcgaattactcttgcataattttaatttcttgcaat |
14159712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 48 - 254
Target Start/End: Original strand, 23196284 - 23196494
Alignment:
| Q |
48 |
tttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaaac----tttgtgtaaaccgcccattagttggcttta |
143 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||| | | || |||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
23196284 |
tttctgtttgtagcatttcttttgtaatggtttacttt-gcgctcttttagagctcattttgaagtcttttttgtgtaaaccgcccattagttggcctta |
23196382 |
T |
|
| Q |
144 |
atgaaatgctatgtttgagtttat--tttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttatt |
241 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||| |||||| |
|
|
| T |
23196383 |
-tgaaatgctatgtttgaatttgtcttttcgaattactcttgtatgatcttaatttcttgtaatgtcggtttatactttttcaagtactttctgtttatt |
23196481 |
T |
|
| Q |
242 |
cgcaaaatccttc |
254 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
23196482 |
cgtaaaatccttc |
23196494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 48 - 254
Target Start/End: Original strand, 23621889 - 23622098
Alignment:
| Q |
48 |
tttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaaac---tttgtgtaaaccgcccattagttggctttaa |
144 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||| | | | |||||||| |||||||| ||||||||||||||||| ||| |
|
|
| T |
23621889 |
tttctgtttgtagcatttcttttgtaatggtttacttt-gcgctcttttagagttcattttgaagtctttttgtgtagaccgcccattagttggcctta- |
23621986 |
T |
|
| Q |
145 |
tgaaatgctatgtttgagtttat--tttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattc |
242 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
23621987 |
tgaaatgctatgtttgaatttgtcttttcgaattactcttgtatgatcttaatttcttgtaacgtcggtttatactttttcaagtactttccgtttattc |
23622086 |
T |
|
| Q |
243 |
gcaaaatccttc |
254 |
Q |
| |
|
| |||||||||| |
|
|
| T |
23622087 |
gtaaaatccttc |
23622098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 254
Target Start/End: Complemental strand, 22643068 - 22642858
Alignment:
| Q |
48 |
tttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaaac----tttgtgtaaaccgcccattagttggcttta |
143 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || |||||| | | || |||||||| |||||||||||| ||||||||||||| ||| |
|
|
| T |
22643068 |
tttctgtttgtagcatttcttttgtaatggtttacttt-gctctcttttagagctcattttgaattcttttttgtgtaaaccacccattagttggcctta |
22642970 |
T |
|
| Q |
144 |
atgaaatgctatgtttgagtttat--tttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttatt |
241 |
Q |
| |
|
|||||| ||| ||||| ||||| |||||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
22642969 |
-tgaaattttatttttgaatttatcttttcgaattactcttgtatgatcttaatttcttgtaacgtcggtttatactttttcaagtactttccgtttatt |
22642871 |
T |
|
| Q |
242 |
cgcaaaatccttc |
254 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
22642870 |
cgtaaaatccttc |
22642858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 24954518 - 24954362
Alignment:
| Q |
7 |
gcttcggccaacttgtgtagggtcttccatcgaatagtcattttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaa-cttat |
105 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||||| | | ||||||| ||||||||||||||||||||||||||||||| |||||||||| | | | | | |
|
|
| T |
24954518 |
gctttggccaacttatgtaggggtctccatcgaagaattattttctgtttgtagcatttcttttgtaatggtttactt-cgcgctctttttagagcctct |
24954420 |
T |
|
| Q |
106 |
tttgaaactttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagtt |
164 |
Q |
| |
|
||||||| | |||||||||||||||||||||||| || |||||||||||| |||||||| |
|
|
| T |
24954419 |
tttgaaattatgtgtaaaccgcccattagttggc-ttcatgaaatgctatatttgagtt |
24954362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 253
Target Start/End: Complemental strand, 24921181 - 24921043
Alignment:
| Q |
118 |
tgtaaaccgcccattagttggcttta---atgaaatgctatgtttgagtttattttcgaattactcttgtatgattttaatttcttgcaatgttggttta |
214 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||||||||| | ||| ||||||||| |||| || ||||||||||||||||||| ||| |||||| |
|
|
| T |
24921181 |
tgtaaaccgcccattagttgaccttctgtatgaaatgctatgtttaaatttcttttcgaatcactcgtgcatgattttaatttcttgcagtgtcggttta |
24921082 |
T |
|
| Q |
215 |
tacttcttcaagtattttccatttattcgcaaaatcctt |
253 |
Q |
| |
|
||||| |||||||| ||| | ||||| ||||| |||||| |
|
|
| T |
24921081 |
tactttttcaagtacttttcgtttatccgcaagatcctt |
24921043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 48 - 254
Target Start/End: Original strand, 4278 - 4488
Alignment:
| Q |
48 |
tttctttttgtagcatttc-ttttgtaatggtttactttcgcgctctttcaaaacttattttgaa---actttgtgtaaaccgcccattagttggcttta |
143 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| ||||||||| | | || |||||||| |||||||||||||||||||||||||| || |
|
|
| T |
4278 |
tttctgtttgtagcatttctttttgtaatggtttacttt-gcgctcttttagagctcattttgaagtctttttgtgtaaaccgcccattagttggcctt- |
4375 |
T |
|
| Q |
144 |
atgaaatgctatgtttgagtt--tattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttatt |
241 |
Q |
| |
|
|||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
4376 |
atgaaatgctatgtttgaatttgtcttttcgaattactcttgtatgatcttaatttcttgtaacgtcggtttatactttttcaagtactttccgtttatt |
4475 |
T |
|
| Q |
242 |
cgcaaaatccttc |
254 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
4476 |
cgtaaaatccttc |
4488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 54 - 254
Target Start/End: Original strand, 33091 - 33295
Alignment:
| Q |
54 |
tttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaaac----tttgtgtaaaccgcccattagttggctttaatgaaa |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | | | |||||||| |||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
33091 |
tttgtagcatttcttttgtaatggtttacttt-gcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggcctta-tgaaa |
33188 |
T |
|
| Q |
150 |
tgctatgtttgagtttat--tttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcgcaaa |
247 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| ||||| |||||||| ||| |
|
|
| T |
33189 |
tgctatgtttgaatttgtcttttcgaattactcttgtatgatcttaatttcttgtaacgtcggtttatactttttcaagtactttccgtttattcgtaaa |
33288 |
T |
|
| Q |
248 |
atccttc |
254 |
Q |
| |
|
||||||| |
|
|
| T |
33289 |
atccttc |
33295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 48 - 254
Target Start/End: Original strand, 19030611 - 19030819
Alignment:
| Q |
48 |
tttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaaact----ttgtgtaaaccgcccattagttggcttta |
143 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||| | | | |||||| || | ||||||||||||||||||||||||| ||| |
|
|
| T |
19030611 |
tttcattttgtagcatttcttttgtaatggtttacttt-gcgctcttt-agagcccattttggaattccttttgtgtaaaccgcccattagttggcctta |
19030708 |
T |
|
| Q |
144 |
atgaaatgctatgtttgag-tttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattc |
242 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
19030709 |
-tgaaatgctatgtttgaactttcttttcgaattactcctgtatgatcttaatttcttgtaatgtcggtttatactttttcaagtactttccgtttattc |
19030807 |
T |
|
| Q |
243 |
gcaaaatccttc |
254 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
19030808 |
gcaagatccttc |
19030819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 54 - 254
Target Start/End: Original strand, 14562677 - 14562881
Alignment:
| Q |
54 |
tttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaaac----tttgtgtaaaccgcccattagttggctttaatgaaa |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | | | |||||||| |||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
14562677 |
tttgtagcatttcttttgtaatggtttacttt-gcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggcctta-tgaaa |
14562774 |
T |
|
| Q |
150 |
tgctatgtttgagtttat--tttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcgcaaa |
247 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| ||||| |||||||| ||| |
|
|
| T |
14562775 |
tgctatgtttgaatttgtcttttcgaattactcttgtatgatcttaatttcttgtaacgtcggtttatactttttcaagtactttccgtttattcgtaaa |
14562874 |
T |
|
| Q |
248 |
atccttc |
254 |
Q |
| |
|
||||||| |
|
|
| T |
14562875 |
atccttc |
14562881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 254
Target Start/End: Original strand, 13284824 - 13285016
Alignment:
| Q |
66 |
cttttgtaatggtttactttcgcgctctttcaaaacttattttgaaacttt----gtgtaaaccgcccattagttggctttaatgaaatgctatgtttga |
161 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | | | |||||| || ||| |||||||||||||||||| |||| ||| ||||||||||| || || |
|
|
| T |
13284824 |
cttttgtaatggtttacttttgcgctcttt-agagcccattttggaatttttatcgtgtaaaccgcccattagctggcctta-tgaaatgctatattgga |
13284921 |
T |
|
| Q |
162 |
g--tttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcgcaaaatccttc |
254 |
Q |
| |
|
||| |||||||||||||| || || |||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
13284922 |
acttttcttttcgaattactcctgcataattttaatttcttgtaatgtcggtttatactttttcaagtactttccgtttattcgcaagatccttc |
13285016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 14742530 - 14742617
Alignment:
| Q |
167 |
ttttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcgcaaaatccttc |
254 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
14742530 |
ttttcgaattactcttgcacgattttaatttcttgtaatgtcggtttatactttttcaagtattttccgtttattcgcaagatccttc |
14742617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 48 - 254
Target Start/End: Original strand, 18465 - 18675
Alignment:
| Q |
48 |
tttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaaac----tttgtgtaaaccgcccattagttggcttta |
143 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||| | | | |||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
18465 |
tttctgtttgtagcatttcttttgtaatggtttacttt-gcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggcctta |
18563 |
T |
|
| Q |
144 |
atgaaatgctatgtttgagtttat--tttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttatt |
241 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||||| || || || |||||||| |||||||| ||||| |||||| |
|
|
| T |
18564 |
-tgaaatgctatgtttgaatttgtcttttcgaattactcttgtatgatcttaatttcttgtaacgtcgggttatactttttcaagtactttccgtttatt |
18662 |
T |
|
| Q |
242 |
cgcaaaatccttc |
254 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
18663 |
cgtaaaatccttc |
18675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 48 - 254
Target Start/End: Original strand, 127973 - 128183
Alignment:
| Q |
48 |
tttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaaac----tttgtgtaaaccgcccattagttggcttta |
143 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||| | | || ||||| || |||||||||||| ||||||||||||| ||| |
|
|
| T |
127973 |
tttctgtttgtagcatttcttttgtaatggtttacttt-gcgctcttttagagctcatttttaagtcttgtttgtgtaaaccacccattagttggcctta |
128071 |
T |
|
| Q |
144 |
atgaaatgctatgtttgagtttat--tttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttatt |
241 |
Q |
| |
|
||||||||||||||||| ||| | ||| |||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| |||||||||||| |
|
|
| T |
128072 |
-tgaaatgctatgtttgaatttgtcttttggaattactcttgtatgatcttaatttcttgtaacgtcggtttatactttttcaagtactttccatttatt |
128170 |
T |
|
| Q |
242 |
cgcaaaatccttc |
254 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
128171 |
cgtaaaatccttc |
128183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 254
Target Start/End: Complemental strand, 28366 - 28156
Alignment:
| Q |
48 |
tttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaaactt----tgtgtaaaccgcccattagttggcttta |
143 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||| ||||||||| | | | ||||||| || |||||||||||||||||||||||| ||| |
|
|
| T |
28366 |
tttctgtttctagcatttcttttgtaatggtttacttt-gcgctcttttagagcccgttttgaagtttcttttgtgtaaaccgcccattagttggcctta |
28268 |
T |
|
| Q |
144 |
atgaaatgctatgtttgagtttat--tttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttatt |
241 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
28267 |
-tgaaatgctatgtttgaatttgtcttttcgaattactcttgtatgatcttaatttcttgtaacgtcggtttatactttttcaagtactttccgtttatt |
28169 |
T |
|
| Q |
242 |
cgcaaaatccttc |
254 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
28168 |
cgtaaaatccttc |
28156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 58 - 264
Target Start/End: Complemental strand, 74168 - 73958
Alignment:
| Q |
58 |
tagcatttcttttgtaatggtttactttcgcgctctttcaaaa-cttattttgaaac---tttgtgtaaaccgcccattagttggctttaatgaaatgct |
153 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| | | | |||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
74168 |
tagcatttcttttgtaatggtttacttt-gcgctctttttagagcccattttgaagtctttttgtgtaaaccgcccattagttggcttta-tgaaatgct |
74071 |
T |
|
| Q |
154 |
atgtttgagtttat--tttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcgcaaaatcc |
251 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| || ||||| || ||||| ||||||||||| || ||||| ||||| |||||||| ||||||| |
|
|
| T |
74070 |
atgtttgaatttatcttttcgaattactcttgtatgatcttgatttcctgtaatgtcggtttatacttttttaagtactttccgtttattcgtaaaatcc |
73971 |
T |
|
| Q |
252 |
ttcaatcgtcgtt |
264 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
73970 |
ttcgatcttcgtt |
73958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 114 - 254
Target Start/End: Complemental strand, 19078 - 18937
Alignment:
| Q |
114 |
tttgtgtaaaccgcccattagttggctttaatgaaatgctatgtttgagtttat--tttcgaattactcttgtatgattttaatttcttgcaatgttggt |
211 |
Q |
| |
|
||||||||||||| |||||||||||| ||| ||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||||| || || ||| |
|
|
| T |
19078 |
tttgtgtaaaccgtccattagttggcctta-tgaaatgctatgtttgaatttgtcttttcgaattactcttgtatgatcttaatttcttgtaacgtcggt |
18980 |
T |
|
| Q |
212 |
ttatacttcttcaagtattttccatttattcgcaaaatccttc |
254 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| |||||||||| |
|
|
| T |
18979 |
ttatactttttcaagtactttccgtttattcgtaaaatccttc |
18937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 253
Target Start/End: Complemental strand, 21515311 - 21515108
Alignment:
| Q |
53 |
ttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaaa---ctttg-tgtaaaccgcccattagttggctttaatgaa |
148 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||| || | || |||||||| |||| |||||||||||||||||||||| || |||| |
|
|
| T |
21515311 |
ttttgtagcatttcttttgtaatggtttatttt-gcgctccttgcgagctcattttgaagatcctttcatgtaaaccgcccattagttggccttg-tgaa |
21515214 |
T |
|
| Q |
149 |
atgctatgtttgagttta-ttttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcgcaaa |
247 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
21515213 |
atgctatgtttgaattttcttttcgaattactctcgtatgatcttaatttcttgtaatgtcggtttatactttttcaagtactttccgtttattcgcaag |
21515114 |
T |
|
| Q |
248 |
atcctt |
253 |
Q |
| |
|
|||||| |
|
|
| T |
21515113 |
atcctt |
21515108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 253
Target Start/End: Complemental strand, 8826 - 8688
Alignment:
| Q |
118 |
tgtaaaccgcccattagttggcttta---atgaaatgctatgtttgagtttattttcgaattactcttgtatgattttaatttcttgcaatgttggttta |
214 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| | ||| ||||||||| ||||||| || |||||||||||||||| ||| |||||| |
|
|
| T |
8826 |
tgtaaaccgcccattagttggccttctgtatgaaatgctatgtttaaatttcttttcgaatcactcttgcataattttaatttcttgcagtgtcggttta |
8727 |
T |
|
| Q |
215 |
tacttcttcaagtattttccatttattcgcaaaatcctt |
253 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| |||||| |
|
|
| T |
8726 |
tactttttcaagtactttccgtttattcgcaagatcctt |
8688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 253
Target Start/End: Complemental strand, 23694 - 23556
Alignment:
| Q |
118 |
tgtaaaccgcccattagttggcttta---atgaaatgctatgtttgagtttattttcgaattactcttgtatgattttaatttcttgcaatgttggttta |
214 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||| | ||| ||||||||| ||||||| || |||||||||||||||| ||| |||||| |
|
|
| T |
23694 |
tgtaaaccgcccattagttggccttttgtatgaaatgctatgtttaaatttcttttcgaatcactcttgcataattttaatttcttgcagtgtcggttta |
23595 |
T |
|
| Q |
215 |
tacttcttcaagtattttccatttattcgcaaaatcctt |
253 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||| |||||| |
|
|
| T |
23594 |
aactttttcaagtactttccgtttattcgcaagatcctt |
23556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 48 - 253
Target Start/End: Original strand, 128083 - 128293
Alignment:
| Q |
48 |
tttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaa---actttg-tgtaaaccgcccattagttggcttta |
143 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||| | | | |||||||| ||||| |||||||||||||| ||||||| || |
|
|
| T |
128083 |
tttctttttgtagcatt-cttttgtaatggtttacttt-gcgctctt--agagcccattttgaagacacttttatgtaaaccgcccatcagttggccttc |
128178 |
T |
|
| Q |
144 |
----atgaaatgctatgtttgagttta-ttttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccattt |
238 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||| |
|
|
| T |
128179 |
ttatatgaaatgctatgtttaagttttcttttcgaattactattgcatgattttaatttcttgtaatgtcggtttatactttttcaagtactttccgttt |
128278 |
T |
|
| Q |
239 |
attcgcaaaatcctt |
253 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
128279 |
attcgcaagatcctt |
128293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 253
Target Start/End: Original strand, 122288 - 122423
Alignment:
| Q |
118 |
tgtaaaccgcccattagttggctttaatgaaatgctatgtttgagttta-ttttcgaattactcttgtatgattttaatttcttgcaatgttggtttata |
216 |
Q |
| |
|
||||| || ||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |||| |||||||| |
|
|
| T |
122288 |
tgtaagccacccattagttggcctta-tgaaatgctatgtttgaattttcttttcgaattactcttgtatgatcttaatttcttgtgatgtcggtttata |
122386 |
T |
|
| Q |
217 |
cttcttcaagtattttccatttattcgcaaaatcctt |
253 |
Q |
| |
|
||| |||||||| ||||| ||||||||||| |||||| |
|
|
| T |
122387 |
ctttttcaagtactttccgtttattcgcaagatcctt |
122423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 122216 - 122263
Alignment:
| Q |
48 |
tttctttttgtagcatttcttttgtaatggtttactttcgcgctctttc |
96 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
122216 |
tttcgttttgtagcatttcgtttgtaatggttta-ttttgcgctctttc |
122263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 254
Target Start/End: Complemental strand, 19367 - 19256
Alignment:
| Q |
144 |
atgaaatgctatgtttgagttta-ttttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattc |
242 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
19367 |
atgaaatgctatgtttaaattttcttttcgaattactcttgcatgattttaatttcttgtaatgtcggtttatactttttcaagtactttccgtttattc |
19268 |
T |
|
| Q |
243 |
gcaaaatccttc |
254 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
19267 |
gcaagatccttc |
19256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0282 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0282
Description:
Target: scaffold0282; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 52 - 246
Target Start/End: Original strand, 2587 - 2789
Alignment:
| Q |
52 |
tttttgtagcatttctttt-gtaatggtttactttcgcgctctttcaaaacttattttgaaa----ctttgtgtaaaccgcccattagttggcttta--- |
143 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| || ||||| | | | ||||||||| |||| |||||||||||||| ||||||| || |
|
|
| T |
2587 |
tttttgtagcatttctttttgtaatggtttacttt-gcactctt--agagcctattttgaagacacctttatgtaaaccgcccatcagttggccttctta |
2683 |
T |
|
| Q |
144 |
--atgaaatgctatgtttga-gtttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttat |
240 |
Q |
| |
|
||||||||||||| || | |||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||| |
|
|
| T |
2684 |
atatgaaatgctatgcttaaagtttcttttcgaattactcttgcatgattttaatttcttgtaatgtcggtttatactttttcaagtactttccgtttat |
2783 |
T |
|
| Q |
241 |
tcgcaa |
246 |
Q |
| |
|
|||||| |
|
|
| T |
2784 |
tcgcaa |
2789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 254
Target Start/End: Complemental strand, 68796 - 68688
Alignment:
| Q |
147 |
aaatgctatgtttgagttta-ttttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcgca |
245 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
68796 |
aaatgctatgtttaaattttcttttcgaattactcttgcatgattttaatttcttgtaatgtcggtttatactttttcaagtactttccgtttattcgca |
68697 |
T |
|
| Q |
246 |
aaatccttc |
254 |
Q |
| |
|
| ||||||| |
|
|
| T |
68696 |
agatccttc |
68688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 254
Target Start/End: Complemental strand, 77974 - 77866
Alignment:
| Q |
147 |
aaatgctatgtttgagttta-ttttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcgca |
245 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
77974 |
aaatgctatgtttaaattttcttttcgaattactcttgcatgattttaatttcttgtaatgtcggtttatactttttcaagtactttccgtttattcgca |
77875 |
T |
|
| Q |
246 |
aaatccttc |
254 |
Q |
| |
|
| ||||||| |
|
|
| T |
77874 |
agatccttc |
77866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 8133 - 8024
Alignment:
| Q |
144 |
atgaaatgctatgtttgagtttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcg |
243 |
Q |
| |
|
||||||||| |||||||| || |||||||| ||||||| || || |||||||||| || | | || |||||||| |||||||| ||||| |||||||| |
|
|
| T |
8133 |
atgaaatgccatgtttgaattgcctttcgaatcactcttgcataatcttaatttcttacagtatcggcttatactttttcaagtactttccgtttattcg |
8034 |
T |
|
| Q |
244 |
caaaatcctt |
253 |
Q |
| |
|
||| |||||| |
|
|
| T |
8033 |
caagatcctt |
8024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 254
Target Start/End: Complemental strand, 35728 - 35520
Alignment:
| Q |
48 |
tttctttttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaaa---ctttgtgtaaaccgcccattagttggctttaa |
144 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| ||||||||| | | | |||||| || |||| |||| | ||||||||||||||| ||| |
|
|
| T |
35728 |
tttccttttgtagcatttcttttgtaatggtttatttt-gcgctcttt-agagcccattttggaattcctttttgtacaacgcccattagttggcctta- |
35632 |
T |
|
| Q |
145 |
tgaaatgctatgtttgag--tttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattc |
242 |
Q |
| |
|
|||||||||| ||| || ||| ||||||||||| || || || |||||||||||||| ||||| |||||||||| |||||||| ||||| |||||| |
|
|
| T |
35631 |
tgaaatgctacgttggaacttttcttttcgaattattcctgcataattttaatttcttgtaatgtcagtttatactttttcaagtactttccgtttattt |
35532 |
T |
|
| Q |
243 |
gcaaaatccttc |
254 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
35531 |
gcaagatccttc |
35520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 38647 - 38538
Alignment:
| Q |
54 |
tttgtagcatttcttttgtaatggtttactttcgcgctctttcaaaacttattttgaaac----tttgtgtaaaccgcccattagttggctttaatgaaa |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | | | |||||||| |||||||||||||||||||||||||| || |||||| |
|
|
| T |
38647 |
tttgtagcatttcttttgtaatggtttacttt-gcgctcttttagagcccattttgaagtctcttttgtgtaaaccgcccattagttggcctt-atgaaa |
38550 |
T |
|
| Q |
150 |
tgctatgtttga |
161 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38549 |
tgctatgtttga |
38538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1900 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1900
Description:
Target: scaffold1900; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 1 - 66
Alignment:
| Q |
188 |
attttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcgcaaaatcctt |
253 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| |||||||| ||||| ||||||||||| |||||| |
|
|
| T |
1 |
attttaatttcttgcagtgtcggtttatactttttcaagtactttccgtttattcgcaagatcctt |
66 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 57490 - 57391
Alignment:
| Q |
144 |
atgaaatgctatgtttgagtttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcg |
243 |
Q |
| |
|
||||||||| |||||| | ||| ||||||||| ||||||| || || ||||||||||||| | | || |||||||| |||||||| ||||| |||||||| |
|
|
| T |
57490 |
atgaaatgccatgttttaatttcttttcgaatcactcttgcataatcttaatttcttgcagtatcggcttatactttttcaagtactttccgtttattcg |
57391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0239 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0239
Description:
Target: scaffold0239; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 25247 - 25345
Alignment:
| Q |
145 |
tgaaatgctatgtttgagtttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcg |
243 |
Q |
| |
|
|||||||| |||||| | ||| ||||||||||||||||| || || ||||||||||| | | || |||||||| || |||||||||||||||||||| |
|
|
| T |
25247 |
tgaaatgccatgttttaatttcttttcgaattactcttgcataatcttaatttcttgtagcatcggcttatacttttttaagtattttccatttattcg |
25345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 3588 - 3471
Alignment:
| Q |
148 |
aatgctatgtttgagtttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcgcaaa |
247 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||||||| ||||||||||||||| | | |||||||||| |||||||||||||| |||||| | || |
|
|
| T |
3588 |
aatgctatgtttt-gtttcttttcgaactactcttgtacgattttaatttcttgtagcatcagtttatactttttcaagtattttccgtttattggtaag |
3490 |
T |
|
| Q |
248 |
atccttcaatcgtcgttca |
266 |
Q |
| |
|
|| ||| ||||||||||| |
|
|
| T |
3489 |
attctttgatcgtcgttca |
3471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 153430 - 153313
Alignment:
| Q |
148 |
aatgctatgtttgagtttattttcgaattactcttgtatgattttaatttcttgcaatgttggtttatacttcttcaagtattttccatttattcgcaaa |
247 |
Q |
| |
|
||||| |||||| ||||| ||||||||||||||||| | |||||||||||||| | | || |||||||| || ||||||||||| |||||||| || |
|
|
| T |
153430 |
aatgccatgttt-agtttcttttcgaattactcttgcacaattttaatttcttgtagcatcggcttatacttttttaagtattttccgtttattcgtaag |
153332 |
T |
|
| Q |
248 |
atccttcaatcgtcgttca |
266 |
Q |
| |
|
|||||| ||| ||||||| |
|
|
| T |
153331 |
atcctttgatcatcgttca |
153313 |
T |
|
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