View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7022_high_12 (Length: 245)
Name: NF7022_high_12
Description: NF7022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7022_high_12 |
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| [»] scaffold0703 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 16862890 - 16863121
Alignment:
| Q |
1 |
cataatctcttggaagaaacctcccgaaggtgtcctaaagtgtaacatcgatgccgcatctttcagccataacactgtaacaggtttcggaatgtgcttt |
100 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
16862890 |
cataacctcttggaagaaacctccagaaggtgtcctaaagtgtaacatcgatgccgcaactttcagccataacactgtaacaggttttggaatgtgcttt |
16862989 |
T |
|
| Q |
101 |
cgaaactttaggggccaattgttaatggggaaatcagctcttctgcaatcatttggttctgtcctagaagctgaagctgttgctatgcttgacgcattac |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16862990 |
cgaaactttaagggccaattgttaatggggaaatcagctcttctgcaatcatttggttctgtcctagaagctgaagctgttgctatgcttgacgcattac |
16863089 |
T |
|
| Q |
201 |
acacggcaattgcaactggctaccatgatgtc |
232 |
Q |
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||||||||||||| ||||||||||||||||| |
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| T |
16863090 |
tcacggcaattgcagctggctaccatgatgtc |
16863121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 53986304 - 53986073
Alignment:
| Q |
1 |
cataatctcttggaagaaacctcccgaaggtgtcctaaagtgtaacatcgatgccgcatctttcagccataacactgtaacaggtttcggaatgtgcttt |
100 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
53986304 |
cataatctcttggaagaagcctccagaaggtgtcctaaagtgtaacatcgatgccgcaactttcagccataacactgtaacaggttttggaatgtgcttt |
53986205 |
T |
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| Q |
101 |
cgaaactttaggggccaattgttaatggggaaatcagctcttctgcaatcatttggttctgtcctagaagctgaagctgttgctatgcttgacgcattac |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53986204 |
cgaaactttaggggccaattgttaatggggaaataagctcttctgcaatcatttggttctgtcctagaagctgaagctgttgctatgcttgacgcattac |
53986105 |
T |
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| Q |
201 |
acacggcaattgcaactggctaccatgatgtc |
232 |
Q |
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||||| |||||||| ||||||||||||||||| |
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| T |
53986104 |
acacgacaattgcagctggctaccatgatgtc |
53986073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 12459218 - 12458987
Alignment:
| Q |
1 |
cataatctcttggaagaaacctcccgaaggtgtcctaaagtgtaacatcgatgccgcatctttcagccataacactgtaacaggtttcggaatgtgcttt |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
12459218 |
cataatctcttggaagaagcctccagaaggtgtcctaaagtgtaacatcgatgccgcaactttcagccataacactgtaacaggttttggaatgtgcttt |
12459119 |
T |
|
| Q |
101 |
cgaaactttaggggccaattgttaatggggaaatcagctcttctgcaatcatttggttctgtcctagaagctgaagctgttgctatgcttgacgcattac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12459118 |
cgaaactttaggggccaattgttaatggggaaatcagctcttctgcaatcatttggttctgtcctagaagctgaagctgttgctatgcttgacgcattac |
12459019 |
T |
|
| Q |
201 |
acacggcaattgcaactggctaccatgatgtc |
232 |
Q |
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||||| ||||| || ||||||||||||||||| |
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| T |
12459018 |
acacgtcaatttcagctggctaccatgatgtc |
12458987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 110 - 1
Alignment:
| Q |
1 |
cataatctcttggaagaaacctcccgaaggtgtcctaaagtgtaacatcgatgccgcatctttcagccataacactgtaacaggtttcggaatgtgcttt |
100 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
110 |
cataacctcttggaagaaacctccagaaggtgtcctaaagtgtaacatcgatgccgcaactttcagccataacactgtaacaggttttggaatgtgcttt |
11 |
T |
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| Q |
101 |
cgaaacttta |
110 |
Q |
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|||||||||| |
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| T |
10 |
cgaaacttta |
1 |
T |
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