View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7022_high_4 (Length: 498)
Name: NF7022_high_4
Description: NF7022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7022_high_4 |
 | |
|
| [»] chr6 (7 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 96 - 498
Target Start/End: Complemental strand, 380396 - 379991
Alignment:
| Q |
96 |
gataaccataagttaaatcatttgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagc |
195 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
380396 |
gataaccatgagttaaatcatttgttgctaggaaagaaatacaaaaatgatgaccaaccttacctcttttagcatttgtgatcacgttcatcattgaagc |
380297 |
T |
|
| Q |
196 |
ttcttccacgcttgctgccaaccgcatcaagttcatcaatgaatatgattgacggtgaaatttccttgctgtactgaacaggtctctgattctagctgca |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
380296 |
ttcttccacgcttgctgccaaccgcatcaagttcatcaatgaatatgattgacggtgaaatttccttgctgtactgaacaggtctctgattctagctgca |
380197 |
T |
|
| Q |
296 |
cctcttccaataaacaattctacaaactcgttagcag--actgtg-aaaaagggtacacctgctccccccgctactgcacgcgcaagtaatgtcttgcca |
392 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
380196 |
cctcttccaacaaacaattctacaaactcgttagcagatactgtgaaaaaagggtacacctgctccccccgctactgcatgcgcaagtaatgtcttgcca |
380097 |
T |
|
| Q |
393 |
gttcctggaggaccgactagcaatactcctctgggtagctcgtcagatgtaatggtcaaatctcaaagcaatacagattggaaatcaatgaatactccct |
492 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
380096 |
gttcctggaggactgactagcaatactcctctgggtagctcgtcagatgtaatggtcaaatctcaaagcaatacagattggaaatcaatgaatactccct |
379997 |
T |
|
| Q |
493 |
ccatgc |
498 |
Q |
| |
|
|||||| |
|
|
| T |
379996 |
ccatgc |
379991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 6300454 - 6300039
Alignment:
| Q |
17 |
atacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagttaaatcat |
116 |
Q |
| |
|
|||||||||||||||| ||| |||| | |||||| |||||| |||| |||||| | ||| ||||||| || |||||||||||| || |||| ||| | |
|
|
| T |
6300454 |
atacacaccagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataactatgagttcaataaa |
6300355 |
T |
|
| Q |
117 |
ttgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagcttcttccacgcttgctgccaa |
216 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || ||||||| ||||||||||| || ||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
6300354 |
ttgttgctagaaaagaaatacaaaa-tgatgactaaacttgcctgatttagcgtttgg--tcccgttcctcattgaagcctcttccacgcttgccaccaa |
6300258 |
T |
|
| Q |
217 |
ccgcatcaagttcatcaatgaatatgattgacggtg-aaatttccttgctgtactgaacaggtctctgattctagctgcacctcttccaataaacaattc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
6300257 |
ccgcatcaagttcatcaatgaatatgattgatggtgcaaatttccttgctctactgaacaggtctctgattctagctgcacctcttccaacaaacatttc |
6300158 |
T |
|
| Q |
316 |
tacaaactcgttagcaga--ctgtgaaaaagggtacacctgctccccccgctactgcacgcgcaagtaatgtcttgccagttcctggaggaccgactagc |
413 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6300157 |
tacaaactcactagcagatactgtgaaaaagggtacacctgcttcccccgctactgcacgtgcaagtaatgtcttgccagttcctggaggaccgactagc |
6300058 |
T |
|
| Q |
414 |
aatactcctctgggtagct |
432 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
6300057 |
aacactcctctgggtagct |
6300039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 6307264 - 6306849
Alignment:
| Q |
17 |
atacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagttaaatcat |
116 |
Q |
| |
|
|||||||||||||||| ||| |||| | |||||| |||||| |||| |||||| | ||| ||||||| || |||||||||||| || |||| ||| | |
|
|
| T |
6307264 |
atacacaccagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataactatgagttcaataaa |
6307165 |
T |
|
| Q |
117 |
ttgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagcttcttccacgcttgctgccaa |
216 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| || ||||||| ||||||||||| || ||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
6307164 |
ttgttgctagaaaagaaatacaaaa-tgatgactaaacttgcctgatttagcgtttgg--tcccgttcctcattgaagcctcttccacgcttgccaccaa |
6307068 |
T |
|
| Q |
217 |
ccgcatcaagttcatcaatgaatatgattgacggtg-aaatttccttgctgtactgaacaggtctctgattctagctgcacctcttccaataaacaattc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
6307067 |
ccgcatcaagttcatcaatgaatatgattgatggtgcaaatttccttgctctactgaacaggtctctgattctagctgcacctcttccaacaaacatttc |
6306968 |
T |
|
| Q |
316 |
tacaaactcgttagcaga--ctgtgaaaaagggtacacctgctccccccgctactgcacgcgcaagtaatgtcttgccagttcctggaggaccgactagc |
413 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6306967 |
tacaaactcactagcagatactgtgaaaaagggtacacctgcttcccccgctactgcacgtgcaagtaatgtcttgccagttcctggaggaccgactagc |
6306868 |
T |
|
| Q |
414 |
aatactcctctgggtagct |
432 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
6306867 |
aacactcctctgggtagct |
6306849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 382235 - 382140
Alignment:
| Q |
14 |
aatatacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagtt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
382235 |
aatatacacaccagagatttgtattgatttaattcagtttagtatcgaatcaagatatgtctcacatgcatcttaagatattgataaccatgagtt |
382140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 435 - 490
Target Start/End: Complemental strand, 6299353 - 6299298
Alignment:
| Q |
435 |
tcagatgtaatggtcaaatctcaaagcaatacagattggaaatcaatgaatactcc |
490 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
6299353 |
tcagatgcaatggtcaaatctcaaagcaatacagaatggaaatcagtgaatactcc |
6299298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 435 - 490
Target Start/End: Complemental strand, 6306163 - 6306108
Alignment:
| Q |
435 |
tcagatgtaatggtcaaatctcaaagcaatacagattggaaatcaatgaatactcc |
490 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
6306163 |
tcagatgcaatggtcaaatctcaaagcaatacagaatggaaatcagtgaatactcc |
6306108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 30863989 - 30864065
Alignment:
| Q |
17 |
atacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagata |
93 |
Q |
| |
|
|||||||| |||||||||||| |||| | |||| |||||||| ||||| ||||| | |||||||| ||| ||||||| |
|
|
| T |
30863989 |
atacacactagagatttgtatcgattgagttcattttagtattgaatcgagatacgactcacatgtatcgtaagata |
30864065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 30035413 - 30035336
Alignment:
| Q |
27 |
gagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccat |
104 |
Q |
| |
|
||||||||||| |||| |||||| || ||||| |||| ||||| | |||||||| ||| ||||||| |||||||||| |
|
|
| T |
30035413 |
gagatttgtatcgattgaattcaattaagtattgaattgagatacgactcacatgtatcataagatactgataaccat |
30035336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University