View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7022_high_7 (Length: 287)
Name: NF7022_high_7
Description: NF7022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7022_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 35828344 - 35828090
Alignment:
| Q |
20 |
aagcctagtaagaagactaacaagttctggtgaaaaccatctaggacacctaaattcacctttataaatcttcttatacatagccataacattattagga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35828344 |
aagcctagtaagaagactaacaagttctggtgaaaaccatctaggacacctaaattcacctttataaatcttcttatacatagccataacattattagga |
35828245 |
T |
|
| Q |
120 |
tcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaaccccacaagaccaaatatcaaccttagcaccatcataacctttcctagacaaaacct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35828244 |
tcatgaaaaggtaaataaccagccatcaaaacaaacaaaacaaccccacaagaccaaatatcaaccttagcaccatcataacctttcctagacaaaacct |
35828145 |
T |
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| Q |
220 |
caggagcaacataagcaggtgtaccacaaaaagtatgaaacaacccatcttgctt |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35828144 |
caggagcaacataagcaggtgtaccacaaaaagtatgaaacaacccatcttgctt |
35828090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 24948121 - 24948046
Alignment:
| Q |
125 |
aaaaggtaaataaccagccatcaaaacaaacaaaacaaccccacaagaccaaatatcaaccttagcaccatcataa |
200 |
Q |
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|||||| ||||||| || |||||||| |||||||| ||| |||||||| |||| ||||||||||| |||||||||| |
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| T |
24948121 |
aaaaggcaaataacaagtcatcaaaagaaacaaaataacaccacaagatcaaagatcaaccttagtaccatcataa |
24948046 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 48 - 271
Target Start/End: Original strand, 4956589 - 4956809
Alignment:
| Q |
48 |
ggtgaaaaccatctaggacacctaaattcacctttataaatcttcttatacatagccataacattattaggatcatgaaaaggtaaataaccagccatca |
147 |
Q |
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| T |
4956589 |
ggtgaaaaccacctgggacaccgaaactcacccttgtaaatcttcttatacattgccataacatttt---gatcatgaaaaggtaaataaccagccatca |
4956685 |
T |
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| Q |
148 |
aaacaaacaaaacaaccccacaagaccaaatatcaaccttagcaccatcataacctttcctagacaaaacctcaggagcaacataagcaggtgtaccaca |
247 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| |
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| T |
4956686 |
aaacaaacaaaacaacaccacaagaccaaagatcaacctttgcaccatcataacctttcctagccaaaacctcaggtgcaacataagcaggagtaccaca |
4956785 |
T |
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| Q |
248 |
aaaagtatgaaacaacccatcttg |
271 |
Q |
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||||||||||||||| |||||||| |
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| T |
4956786 |
aaaagtatgaaacaaaccatcttg |
4956809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 272
Target Start/End: Complemental strand, 31892813 - 31892667
Alignment:
| Q |
126 |
aaaggtaaataaccagccatcaaaacaaacaaaacaaccccacaagaccaaatatcaaccttagcaccatcataacctttcctagacaaaacctcaggag |
225 |
Q |
| |
|
||||||| ||||||||| | |||||||| | |||||| |||||||||||||||||| | || | |||||||||||| ||||| | || ||||||| |
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| T |
31892813 |
aaaggtacataaccagcaagtaaaacaaaaagaacaactccacaagaccaaatatcagctttggaaccatcataacccttccttttgatcacttcaggag |
31892714 |
T |
|
| Q |
226 |
caacataagcaggtgtaccacaaaaagtatgaaacaacccatcttgc |
272 |
Q |
| |
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||||||||||||| || |||||| ||||| ||||| ||||||||| |
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| T |
31892713 |
caacataagcaggagttccacaagttgtatgcaacaaaccatcttgc |
31892667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 31903948 - 31904032
Alignment:
| Q |
165 |
ccacaagaccaaatatcaaccttagcaccatcataacctttcctagacaaaacctcaggagcaacataagcaggtgtaccacaaa |
249 |
Q |
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||||| ||||||||||| |||||||| |||||||||||| || | | |||| ||| || || ||||| |||||||| ||||||| |
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| T |
31903948 |
ccacatgaccaaatatccaccttagctccatcataacctctcttcgctaaaatctccggtgccacatatgcaggtgttccacaaa |
31904032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 25347424 - 25347349
Alignment:
| Q |
125 |
aaaaggtaaataaccagccatcaaaacaaacaaaacaaccccacaagaccaaatatcaaccttagcaccatcataa |
200 |
Q |
| |
|
|||||| ||||||| || |||||||| |||||||| ||| |||||||| |||| ||||||||||| |||||||||| |
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| T |
25347424 |
aaaaggcaaataacaagtcatcaaaagaaacaaaataacaccacaagatcaaagatcaaccttagtaccatcataa |
25347349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 268
Target Start/End: Original strand, 27312203 - 27312321
Alignment:
| Q |
150 |
acaaacaaaacaaccccacaagaccaaatatcaaccttagcaccatcataacctttcctagacaaaacctcaggagcaacataagcaggtgtaccacaaa |
249 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||| || ||||||||||| ||| | ||| | ||||||||| || || |||||||| || ||||||| |
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| T |
27312203 |
acaaacaaaacaacgccacatgaccaaacatcaactttggcaccatcatatcctcgcttagcaagaacctcaggtgccacgtaagcaggggttccacaaa |
27312302 |
T |
|
| Q |
250 |
aagtatgaaacaacccatc |
268 |
Q |
| |
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|||||||| ||| ||||| |
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| T |
27312303 |
gagtatgaagcaatccatc |
27312321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 12853435 - 12853510
Alignment:
| Q |
125 |
aaaaggtaaataaccagccatcaaaacaaacaaaacaaccccacaagaccaaatatcaaccttagcaccatcataa |
200 |
Q |
| |
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|||||| ||||||| || |||||||| ||| |||| ||| |||||| | |||| ||||||||||| |||||||||| |
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| T |
12853435 |
aaaaggcaaataacaagtcatcaaaagaaagaaaataacaccacaacatcaaagatcaaccttagtaccatcataa |
12853510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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