View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7022_low_1 (Length: 1107)
Name: NF7022_low_1
Description: NF7022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7022_low_1 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 14275945 - 14276293
Alignment:
| Q |
15 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14275945 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaaccaagaaacgataagccccaaccaattatgggcactcaagacttcaggtcccaaccaat |
14276044 |
T |
|
| Q |
115 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccg----accaaattaatc |
210 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
14276045 |
tataggcaccacgcgacaatgaatgtatgcatgcgacacatgattattaactccaaaaaatagatcacacacaatgagtatccgaccaaccaaattaatc |
14276144 |
T |
|
| Q |
211 |
attgtcttaagcacctgctagagacacaaattaca-cctcaataactttgacttacaaatatgcaagacctcaattcatacatgaaaacaatgaattata |
309 |
Q |
| |
|
|||||||||| ||||||| ||||||||| |||||| | |||||||| ||||||||||||||||||| || ||||||| | |||||||||| |||||| |
|
|
| T |
14276145 |
attgtcttaaccacctgccagagacacagattacatcgacaataactctgacttacaaatatgcaagtccgcaattcagatatgaaaacaacaaattatg |
14276244 |
T |
|
| Q |
310 |
ctcacaaccaatacaaaagcaagttcacatagtatgtaaacatggtaca |
358 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14276245 |
ctcacagccaatacaaaagcaagttcacatagtatgtaagcatggtaca |
14276293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 27 - 236
Target Start/End: Original strand, 37627055 - 37627262
Alignment:
| Q |
27 |
acgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaattataggcaccac |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
37627055 |
acgagcctcaaccaattatgagcactcaaa-aggaaacaataagcctcaaccaattatgggcactcaagacttcggatcccaaccaattatgggcaccaa |
37627153 |
T |
|
| Q |
127 |
acgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattgtcttaagcacct |
226 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||||||| ||||||| | |||||||||||||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
37627154 |
gcgacaatgaatgtatgcatgcgacacctgcatattaactccac-aaatagaccactcacaatgagtatgcgactaaattaatcattgtcttaaccacct |
37627252 |
T |
|
| Q |
227 |
gctagagaca |
236 |
Q |
| |
|
|||||||||| |
|
|
| T |
37627253 |
gctagagaca |
37627262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 988 - 1091
Target Start/End: Original strand, 14276403 - 14276506
Alignment:
| Q |
988 |
aactagtcaatttcaataaccattctaacttactcaatattactacaacaatggactagtgttgctcatggttaaactcatataaatgtatgtcctgtta |
1087 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
14276403 |
aactagtcaatttcaataaccattcgaacttactcaatattacaacaacaatggactagtgttgctcatgattaaactcatataaaagtatgtcctgtta |
14276502 |
T |
|
| Q |
1088 |
aaag |
1091 |
Q |
| |
|
|||| |
|
|
| T |
14276503 |
aaag |
14276506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 37803601 - 37803684
Alignment:
| Q |
70 |
gccccaaccaattatgggcactcaagacttcgaatcccaaccaattataggcaccacacgacaataaatgtatgcatgcgacac |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
37803601 |
gccccaaccaattatgggcactcaagacttcgggtcccaaccaattatgggcaccacacgacaatgaatgtatgcatgcgacac |
37803684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 163 - 358
Target Start/End: Original strand, 37806299 - 37806496
Alignment:
| Q |
163 |
aactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattgtcttaagcacctgctagagacacaaattacacc-tcaataactttgac |
261 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| || |||| ||| |
|
|
| T |
37806299 |
aactccacaaaatagaccactcacaatgagtatccgactaaattaatcattgtcttaaccacctgctagagacattgattacaccgacagtaac---gac |
37806395 |
T |
|
| Q |
262 |
ttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactcacaac----caatacaaaagcaagttcacatagtatgtaaacatggta |
356 |
Q |
| |
|
| || ||||||||||||||||||| || |||| ||| || | ||||||||||||| |||||||||| |||||||||||||||||||| |||| || |
|
|
| T |
37806396 |
taacaaaatatgcaagacctcaatccaggcatg-aaataacaagttatactcacaacaaagcaatacaaaatcaagttcacatagtatgtaagcatgata |
37806494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 205 - 343
Target Start/End: Original strand, 33614491 - 33614635
Alignment:
| Q |
205 |
ttaatcattgtcttaagcacctgctagagacacaaattacacct-caataactttgacttacaaa-tatgcaagacctcaattcatacatgaaaacaatg |
302 |
Q |
| |
|
|||||||||||||||| ||| | | |||||||||||||||||| |||||| || |||||||||| ||||||||||| ||||||| ||| ||||||| |
|
|
| T |
33614491 |
ttaatcattgtcttaaccacatacgagagacacaaattacaccaacaataatttcgacttacaaaatatgcaagaccacaattcacgcataaaaacaaca |
33614590 |
T |
|
| Q |
303 |
aattatactcacaac----caatacaaaagcaagttcacatagta |
343 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
33614591 |
aattatactcacaaccaaacaatacaaaatcaagttcatatagta |
33614635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 424 - 453
Target Start/End: Original strand, 37627457 - 37627486
Alignment:
| Q |
424 |
tggagcgccctttcccttaccttagcaata |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37627457 |
tggagcgccctttcccttaccttagcaata |
37627486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 424 - 453
Target Start/End: Original strand, 37806567 - 37806596
Alignment:
| Q |
424 |
tggagcgccctttcccttaccttagcaata |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37806567 |
tggagcgccctttcccttaccttagcaata |
37806596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 8e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 8e-98
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 11991764 - 11992113
Alignment:
| Q |
15 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
114 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
11991764 |
caaatgaaatcaacgagcctcaaccaattatgagcactcaaccaagaaacgataagcctcaaccaattatgggcactcaagactttgggtcccaaccaat |
11991863 |
T |
|
| Q |
115 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
214 |
Q |
| |
|
||| ||||||| ||||||| |||| |||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
11991864 |
tatgggcaccatgcgacaatgaatgcatgcttgcgacacatggttattaactccacaaaatagatcactcacaatgagtattcgaccaaattaatcattg |
11991963 |
T |
|
| Q |
215 |
tctt-aagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatact |
311 |
Q |
| |
|
|||| || |||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
11991964 |
tcttaaaccacctgctagagacacggattacaccgacaataactcggacttacaaaatatgcaagaccgcaattcagacatgaaaacaacgaattatact |
11992063 |
T |
|
| Q |
312 |
ca----caaccaatacaaaagcaagttcacatagtatgtaaacatggtaca |
358 |
Q |
| |
|
|| ||| |||||||||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
11992064 |
cacagccaagcaatacaaaatcaagttc-catagtatgtatgcatggtaca |
11992113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 454 - 496
Target Start/End: Complemental strand, 637749 - 637707
Alignment:
| Q |
454 |
caactcgtggtctttgctccacccaatcttcaccttcacaaat |
496 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
637749 |
caactcgtggtctttgctccaccaaatcttcaccttcaaaaat |
637707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 3e-85; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 15 - 358
Target Start/End: Complemental strand, 2188349 - 2188002
Alignment:
| Q |
15 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2188349 |
caaaagaagacaacgagcctcaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgggcactcaagacttcgggtcccaaccaat |
2188251 |
T |
|
| Q |
115 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
214 |
Q |
| |
|
||| ||||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
2188250 |
tatgagcaccacgcgacaatgaatgtatgcatgcgacacctgcttattaactccacaaaatagaccactcacaatgagtatccgacttaattaatcattg |
2188151 |
T |
|
| Q |
215 |
tcttaagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactc |
312 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| || |||| ||||| || ||||||||||||||||||| || |||| |||||| | |||||||| |
|
|
| T |
2188150 |
tcttaaccacctgctagagacattgattacaccgacagtaacgctgactaacaaaatatgcaagacctcaatccaagcatg-aaacaacaagttatactc |
2188052 |
T |
|
| Q |
313 |
acaac----caatacaaaagcaagttcacatagtatgtaaacatggtaca |
358 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
2188051 |
acaaccaatcaatacaaaatcaagttcacatagtatgtaagcatgataca |
2188002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 19632556 - 19632902
Alignment:
| Q |
15 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
114 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
19632556 |
caaaagaagacaacaagcctcaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgg-cactcaagacttcgggtcccaaccaat |
19632653 |
T |
|
| Q |
115 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
214 |
Q |
| |
|
||| ||||||| ||||| | |||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
19632654 |
tatgagcaccacgcgacactgaatgtatgcatgcgacacctgcttattaactccacaaaatagaccactcacaatgagtatccgactaaattaatcattg |
19632753 |
T |
|
| Q |
215 |
tcttaagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactc |
312 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| || |||| |||||| || ||||||||||||||||||| || |||| |||||| | |||||||| |
|
|
| T |
19632754 |
tcttaaccacctgctagagacattgattacaccgacagtaacgttgactaacaaaatatgcaagacctcaatccaagcatg-aaacaacaagttatactc |
19632852 |
T |
|
| Q |
313 |
acaac----caatacaaaagcaagttcacatagtatgtaaacatggtaca |
358 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
19632853 |
acaacgaagcaatacaaaatcaagttcacatagtatgtaagcatgataca |
19632902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 1608465 - 1608685
Alignment:
| Q |
15 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
114 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
1608465 |
caaaagaaatcaaagagcctcaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgggcactcaagacttagggtcccaaccaat |
1608563 |
T |
|
| Q |
115 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
214 |
Q |
| |
|
||| |||||||| |||| || |||||||||||||||||| | ||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
1608564 |
tatgggcaccacgcgaccatgaatgtatgcatgcgacacctgcttattaactccacaagatagaccactcacaatgagtatccgactaaattaatcattg |
1608663 |
T |
|
| Q |
215 |
tcttaagcacctgctagagaca |
236 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
1608664 |
tcttaaccacctgctagagaca |
1608685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 456 - 529
Target Start/End: Complemental strand, 2187884 - 2187812
Alignment:
| Q |
456 |
actcgtggtctttgctccacccaatcttcaccttcacaaataaatatttactaacttagtttccaattcctatt |
529 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||||| || || ||||||||| ||||||||| ||||||| |
|
|
| T |
2187884 |
actcatggtctttgctccactgaatctataccttcacaaa-aagtacttactaactcagtttccaactcctatt |
2187812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 424 - 453
Target Start/End: Complemental strand, 2187934 - 2187905
Alignment:
| Q |
424 |
tggagcgccctttcccttaccttagcaata |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2187934 |
tggagcgccctttcccttaccttagcaata |
2187905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 15 - 356
Target Start/End: Original strand, 41313585 - 41313931
Alignment:
| Q |
15 |
caaaagaaa-acaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaa |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41313585 |
caaaagaaagacaacgagcctcaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgggcactcaagacttcgggtcccaaccaa |
41313683 |
T |
|
| Q |
114 |
ttataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcatt |
213 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
41313684 |
ttatgagcaccacgcgacaatgaatgtatgcatgcgacacctgcttattaactccacaaaatagaccactcacaatgagtatccgactaaattaatcatt |
41313783 |
T |
|
| Q |
214 |
gtcttaagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatact |
311 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| || |||| | ||| || ||||||||||||||||||| || |||| |||||| | ||||||| |
|
|
| T |
41313784 |
gtcttaaccacctgctagagacattgattacaccaacagtaacgctaactaacaaaatatgcaagacctcaatccaggcatg-aaacaacaagttatact |
41313882 |
T |
|
| Q |
312 |
cacaac----caatacaaaagcaagttcacatagtatgtaaacatggta |
356 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
41313883 |
cacaaccaagcaatacaaaatcaagttcacatagtatgtaagcatggta |
41313931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 456 - 532
Target Start/End: Original strand, 41314051 - 41314126
Alignment:
| Q |
456 |
actcgtggtctttgctccacccaatcttcaccttcacaaataaatatttactaacttagtttccaattcctattact |
532 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||||||||| || || ||||||||| ||||||||| |||||||||| |
|
|
| T |
41314051 |
actcatggtctttgctccacggaatctacaccttcacaaa-aagtacttactaactcagtttccaactcctattact |
41314126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 2e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 19215995 - 19215664
Alignment:
| Q |
15 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
114 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19215995 |
caaaagaagacaacgagcctaaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgggcactcaagacttcgggtcccaaccaat |
19215897 |
T |
|
| Q |
115 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
214 |
Q |
| |
|
||| ||||||| ||||||| ||||||||||||| |||| | |||||||||||||||||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
19215896 |
tatgggcaccatgcgacaatgaatgtatgcatgcaacacctgcttattaactccacaaaataggccactcacaatgagtatccgactaaattaatcatta |
19215797 |
T |
|
| Q |
215 |
tcttaagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactc |
312 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| | ||| ||||||| |||||||||||||| ||||||| |||||||||||| | |||||||| |
|
|
| T |
19215796 |
tcttaaccacctgctagagacactgattacaccgatagtaataccgacttacaaaatatgcaagaccacaattcagacatgaaaacaacaagttatactc |
19215697 |
T |
|
| Q |
313 |
acaac----caatacaaaagcaagttcacatag |
341 |
Q |
| |
|
||||| |||||||||| ||||||||||||| |
|
|
| T |
19215696 |
acaaccaagcaatacaaaatcaagttcacatag |
19215664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 19589736 - 19589466
Alignment:
| Q |
18 |
aagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaattat |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||| | |||||| || ||||||||||||| ||||||||||||||| | | |||||||||||| |
|
|
| T |
19589736 |
aagaaaacaacgagtctcaaccaattatgaacactcaaaaca-aaacgacaaaccccaaccaattacgggcactcaagacttagggttccaaccaattat |
19589638 |
T |
|
| Q |
118 |
aggcaccacacgacaataaatgtatgcatgcgacacataatt-attaactcca-caaaatagatcgctcacaatgagtatccgaccaaattaatcattgt |
215 |
Q |
| |
|
|||| |||||||| || ||| |||||||| | |||| || |||||||||| |||||||||| | ||| ||||||||| || |||||||| |||| |
|
|
| T |
19589637 |
gggcagcacacgacgatgaatatatgcatgtaatacatggttaattaactccataaaaatagatcaattacactgagtatccaactaaattaatggttgt |
19589538 |
T |
|
| Q |
216 |
cttaagcacctgctagagacacaaattaca-cctcaataactttgacttac-aaatatgcaagacctcaatt |
285 |
Q |
| |
|
||| |||| ||||||||||| |||||| | |||||| || ||| ||| |||||||||||||| ||||| |
|
|
| T |
19589537 |
tctaaccaccatctagagacacagattacatcaacaataatttcgacatacaaaatatgcaagaccacaatt |
19589466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 2e-73; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 15 - 358
Target Start/End: Complemental strand, 29823121 - 29822775
Alignment:
| Q |
15 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
29823121 |
caaaagaagacaacgagcctcaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgggcgctcaagacttcgggtcccaaccaat |
29823023 |
T |
|
| Q |
115 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
214 |
Q |
| |
|
||| |||||||| ||||||| |||||||||||||||||| | ||||| ||||||||||||||| | ||||||||||||||| ||| ||||||||||| | |
|
|
| T |
29823022 |
tatgggcaccacgcgacaatgaatgtatgcatgcgacacctgcttatt-actccacaaaatagaccactcacaatgagtatctgactaaattaatcatgg |
29822924 |
T |
|
| Q |
215 |
tcttaagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactc |
312 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| || ||||| |||| || |||||||||||||| |||| || |||| |||||| | | |||||| |
|
|
| T |
29822923 |
tcttaaccacctgctagagacattgattacaccgacagtaactccgactaacaaaatatgcaagaccacaatccaagcatg-aaacaacaagtcatactc |
29822825 |
T |
|
| Q |
313 |
acaac----caatacaaaagcaagttcacatagtatgtaaacatggtaca |
358 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
29822824 |
acaaccaagcaatacaaaatcaagttcacatagtatgtaagcatgataca |
29822775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 451958 - 452171
Alignment:
| Q |
15 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
114 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
451958 |
caaaagaaatcaacgagtcccaaccaattatgagcactcaaa-aggaaacaataagccccaaccaattatgggcactcaagacttcgggtcccaaccaat |
452056 |
T |
|
| Q |
115 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
214 |
Q |
| |
|
||| |||||||||||||||| |||||||||||| ||||| | |||||||||||||||||| | | ||||| |||||||| ||||| ||||||||||| |
|
|
| T |
452057 |
tatgggcaccacacgacaatgaatgtatgcatgtgacacctgattattaactccacaaaaaacaccgctcttaatgagtaaccgactaaattaatcat-- |
452154 |
T |
|
| Q |
215 |
tcttaagcacctgctag |
231 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
452155 |
tcttaaccacctgctag |
452171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 7093793 - 7093976
Alignment:
| Q |
15 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
7093793 |
caaaagaaatcaacgagcctcaaccaattatgagcactca-caaggaaacaataagccccaaccaattatgggcactcaagacttcgggtcctaaccaat |
7093891 |
T |
|
| Q |
115 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccga |
199 |
Q |
| |
|
||| |||||||| | ||||| |||||||||||||||||| | |||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
7093892 |
tatgggcaccacgcaacaatgaatgtatgcatgcgacacctgcatattaactccaccaaatagacaactcacaatgaatatccga |
7093976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 7097526 - 7097709
Alignment:
| Q |
15 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
7097526 |
caaaagaaatcaacgagcctcaaccaattatgagcactca-caaggaaacaataagccccaaccaattatgggcactcaagacttcgggtcctaaccaat |
7097624 |
T |
|
| Q |
115 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccga |
199 |
Q |
| |
|
||| |||||||| | ||||| |||||||||||||||||| | |||||||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
7097625 |
tatgggcaccacgcaacaatgaatgtatgcatgcgacacctgcatattaactccaccaaatagacaactcacaatgaatatccga |
7097709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 266 - 358
Target Start/End: Original strand, 453981 - 454077
Alignment:
| Q |
266 |
aaatatgcaagacctcaattcatacatgaaaacaatgaattatactcacaac----caatacaaaagcaagttcacatagtatgtaaacatggtaca |
358 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||||| ||||||| |||||||||||||||||||||||||||| || || |||||| |
|
|
| T |
453981 |
aaatatgcaagaccacaattcatacatgaaaacaacaagttatattcacaaccaagcaatacaaaagcaagttcacatagtatgaaagcagggtaca |
454077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 358
Target Start/End: Original strand, 7094022 - 7094117
Alignment:
| Q |
266 |
aaatatgcaagacctcaattcatacatgaaaacaatgaattatactcacaac----caatacaaaagcaagttcacatagtatgtaaacatggtaca |
358 |
Q |
| |
|
||||||||||||||||||| || |||| |||||| | ||||||||||||| |||||||||| ||||||||| |||||||||| |||| |||| |
|
|
| T |
7094022 |
aaatatgcaagacctcaatccaggcatg-aaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatgtaagcatgataca |
7094117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 358
Target Start/End: Original strand, 7097755 - 7097850
Alignment:
| Q |
266 |
aaatatgcaagacctcaattcatacatgaaaacaatgaattatactcacaac----caatacaaaagcaagttcacatagtatgtaaacatggtaca |
358 |
Q |
| |
|
||||||||||||||||||| || |||| |||||| | ||||||||||||| |||||||||| ||||||||| |||||||||| |||| |||| |
|
|
| T |
7097755 |
aaatatgcaagacctcaatccaggcatg-aaacaacaatttatactcacaaccaagcaatacaaaatcaagttcacctagtatgtaagcatgataca |
7097850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1005 - 1074
Target Start/End: Original strand, 5537758 - 5537827
Alignment:
| Q |
1005 |
aaccattctaacttactcaatattactacaacaatggactagtgttgctcatggttaaactcatataaat |
1074 |
Q |
| |
|
||||||| ||||| | |||| ||||||| ||||| || ||||| ||||||||| ||||||||||| |||| |
|
|
| T |
5537758 |
aaccattttaactcattcaagattactagaacaaggggctagttttgctcatgattaaactcatacaaat |
5537827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 424 - 453
Target Start/End: Complemental strand, 29822706 - 29822677
Alignment:
| Q |
424 |
tggagcgccctttcccttaccttagcaata |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
29822706 |
tggagcgccctttcccttaccttagcaata |
29822677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 424 - 453
Target Start/End: Original strand, 45463068 - 45463097
Alignment:
| Q |
424 |
tggagcgccctttcccttaccttagcaata |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45463068 |
tggagcgccctttcccttaccttagcaata |
45463097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 134; Significance: 3e-69; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 58603 - 58925
Alignment:
| Q |
15 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
58603 |
caaaagaagacaacgagcctcaaccaattatgagcactcaaaaaggaaacaataagccccaaccaattatgggcactcaagacttcgggtcccaaccaat |
58702 |
T |
|
| Q |
115 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
214 |
Q |
| |
|
||| |||||||| ||||||| ||||||||||||||||| | ||||||| ||||||||| | | | |||| |||||||| ||||| ||||||||||| |
|
|
| T |
58703 |
tatgggcaccacgcgacaatgaatgtatgcatgcgacagctggttattaattccacaaaaaacacctctcataatgagtaaccgactaaattaatcat-- |
58800 |
T |
|
| Q |
215 |
tcttaagcacctgctagagacacaaattacacctcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactca |
313 |
Q |
| |
|
|||||| ||||||||||||||||| ||| |||| ||||||| |||||||||||||| |||||||| ||||||||||| | ||||| ||| |
|
|
| T |
58801 |
tcttaaccacctgctagagacacagattgcacc-----------gacttacaaaatatgcaagaccacaattcatgcatgaaaacaacaagttatattca |
58889 |
T |
|
| Q |
314 |
caac----caatacaaaagcaagttcacatagtatg |
345 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |
|
|
| T |
58890 |
caaccaagcaatacaaaagcaagttcacataatatg |
58925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 5e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 8378031 - 8377726
Alignment:
| Q |
15 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaacgaagaaacgataagccccaaccaattatgggcactcaagacttcgaatcccaaccaat |
114 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8378031 |
caaaagaaatcaacgggcctcaaccaattatgagcactca-caaggaaacaataagccccaaccaattatgggcactcaagacttcgggtcccaaccaat |
8377933 |
T |
|
| Q |
115 |
tataggcaccacacgacaataaatgtatgcatgcgacacataattattaactccacaaaatagatcgctcacaatgagtatccgaccaaattaatcattg |
214 |
Q |
| |
|
||| |||||||| | ||||| |||||||||||||||||| | |||||||||||||||||||| |||||||||| |||||||| |||||||||| || |
|
|
| T |
8377932 |
tatgggcaccacgcaacaatgaatgtatgcatgcgacacctgcatattaactccacaaaatagacaactcacaatgaatatccgactaaattaatcactg |
8377833 |
T |
|
| Q |
215 |
tcttaagcacctgctagagacacaaattacacc-tcaataactttgacttac-aaatatgcaagacctcaattcatacatgaaaacaatgaattatactc |
312 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| || |||| ||||| || ||||||||||||||||||| || |||| |||||| | |||||||| |
|
|
| T |
8377832 |
tcttaaccacctgctagagacattgattacaccgacagtaacgctgactaacaaaatatgcaagacctcaatccaggcatg-aaacaacaatttatactc |
8377734 |
T |
|
| Q |
313 |
acaaccaa |
320 |
Q |
| |
|
|||||||| |
|
|
| T |
8377733 |
acaaccaa |
8377726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 16879 - 16839
Alignment:
| Q |
15 |
caaaagaaaacaacgagcctcaaccaattatgagcactcaa |
55 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
16879 |
caaaagaaatcaacgaacctcaaccaattatgagcactcaa |
16839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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