View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7022_low_13 (Length: 254)
Name: NF7022_low_13
Description: NF7022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7022_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 37925446 - 37925221
Alignment:
| Q |
17 |
agaataatgactccttcgctatcaatagacgaagaagaaagccgtgttgaaggaatagaagtatcttgttgtttttgcacaatcttagctctatgggaat |
116 |
Q |
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| T |
37925446 |
agaataatgactccttcgctatcaatagacgaagaagaaagccctgttgaaggaatagaagtatcttgttgtttttgcacaatcttagctctatgggaat |
37925347 |
T |
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| Q |
117 |
tcacttgatcaacattagttaagttttcaagtgggtacaccctttaaattcaactcaataccagctttcaaagaagcgttagaacctcctgttttacctt |
216 |
Q |
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| T |
37925346 |
tcacttgatcaacattagttaagttttcaagtgggtacaccctttaaattcaactcaataacagctttcaaagaagcgttagaacctcctgttttacctt |
37925247 |
T |
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| Q |
217 |
tcgctctagcttgttgcttcatagat |
242 |
Q |
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| T |
37925246 |
tcgctctagcttgttgcttcatagat |
37925221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 35662077 - 35662176
Alignment:
| Q |
135 |
ttaagttttcaagtggg-tacaccctttaaattcaactcaataccagctttcaaagaagcgttagaacctcctgttttacctttcgctctagcttgttgc |
233 |
Q |
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| T |
35662077 |
ttaagttttcaagtgatatacaccctttaatttcaacttaataccagctttaaaaaaaatgttagaaccccttgttttgcctttcgctctagcttgttgc |
35662176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 13976053 - 13975995
Alignment:
| Q |
37 |
atcaatagacgaagaagaaagccgtgttgaaggaatagaagtatcttgttgtttttgca |
95 |
Q |
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| T |
13976053 |
atcaataggcgaagaggaaagtcatggtgaaggaatagaagtatcttgttgtttttgca |
13975995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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