View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7022_low_2 (Length: 638)
Name: NF7022_low_2
Description: NF7022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7022_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 13 - 613
Target Start/End: Original strand, 2767326 - 2767926
Alignment:
| Q |
13 |
atggacatcagcttcaagagtgagatagtgaagattggaaggatctgatatgttgaagtagaagctctcattccaaacaggattaagatccttttcttta |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2767326 |
atggacataagcttcaagagtgagatagtgaagattggaaggatctgatatgttgaagtagaagctctcattccaaacaggattaagatccttttcttta |
2767425 |
T |
|
| Q |
113 |
atggttgttcggaacttttggccgtcgaagtaaagttctacaaaggcattagaagaaccttctccatctttgggtagtagattgtgagcaccaaccacat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2767426 |
atggttgttcggaacttttggccgtcgaagtaaagttctacaaaggcattagaagaaccttctccatctttgggtagtagattgtgagcaccaaccacat |
2767525 |
T |
|
| Q |
213 |
ctacccctaactttaagttgatcataattaaatgtggttccttaacaactgaaattttgagaatttagatacctacaaagagaggaattcaaacatataa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2767526 |
ctacccctaactttaagttgatcataattaaatgtggttccttaacaactgaaattttgagaatttagatacctacaaagagaggaattcaaacatataa |
2767625 |
T |
|
| Q |
313 |
ggatgcttatattatgatatgcctattttgtatgcatattcataataaaacatctaaaaatgtgatattatcagataaactgtgatcattagaataagat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2767626 |
ggatgcttatattatgatatgcctattttgtatgcatattcataataaaacatctaaaaatgtgatattatcagataaactgtgatcattagaataagat |
2767725 |
T |
|
| Q |
413 |
ccaaacatataaggaatgctatttgttaatctacaacaagctacaaaagatggaacaatctcataatcaacataataagatcaaactatatacacaaatt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2767726 |
ccaaacatataaggaatgctatttgttaatctacaacaagctacaaaagatggaacaatctcataatcaacataataagatcaaactatatacacaaatt |
2767825 |
T |
|
| Q |
513 |
ggtattaaagctccggtttcttagaaaaaatgggtctgactaataagaaatttaactagaatgaaagtaaagtctgactaatgattattctaatagaaaa |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2767826 |
ggtattaaagctccggtttcttagaaaaaatgggtctgactaataagaaatttaactagaatgaaagtaaagtctgactaatgattattctaatagaaaa |
2767925 |
T |
|
| Q |
613 |
t |
613 |
Q |
| |
|
| |
|
|
| T |
2767926 |
t |
2767926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University