View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7022_low_3 (Length: 578)
Name: NF7022_low_3
Description: NF7022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7022_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 20 - 565
Target Start/End: Complemental strand, 47467577 - 47467032
Alignment:
| Q |
20 |
ccctggtaagtaactttccactttgtgacctcaacaagttaggcatctatggagcttactcccgtgtataatttgaatgttcagggaaggatactaatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47467577 |
ccctggtaagtaactttccactttgtgacctcaacaagttaggcatctatggagcttactcccgtgtataatttgaatgttcagggaaggatactaatca |
47467478 |
T |
|
| Q |
120 |
atctgttatgacaaattcactacatgaaattatttgaaatttttgaaacctcaattatgattccttttgttgttgcaaatatgactttgcaacctgtcat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47467477 |
atctgttatgacaaattcactacatgaaattatttgaaatttttgaaacctcaattatgattccttttgttgttgcaaatatgactttgcagactgtcat |
47467378 |
T |
|
| Q |
220 |
gtgttgtaggaacaactaagataaaaaatcttgaaagtaatatcagttcgtttaaagtgaaactcaacaaaaatgatttgaaggagattgaagatgctgt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47467377 |
gtgttgtaggaacaactaagataaaaaatcttgaaagtaatatcagttcgtttaaagtgaaactcaacaaaaatgatttgaaggagattgaagatgctgt |
47467278 |
T |
|
| Q |
320 |
gccaatatctgaggtgtcaggggatcggacaactggtgcttttgttcaatgttcttggaagtttgctaatactccaacaaaatcatagcttgatgccagt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47467277 |
gccaatatctgaggtgtcaggggatcggacaactggtgcttttgttcaatgttcttggaagtttgctaatactccaacaaaatcatagcttgatgccagt |
47467178 |
T |
|
| Q |
420 |
tttgtacctcagtgtttgagactcaaactagtttctggtctctttgaatgttgttaaaaatttaatcccatataataaaaccgattgttattggtcgaat |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47467177 |
tttgtacctcagtgtttgagactcaaactagtttctggtctctttgaatgttgttaaaaatttaatcccatataataaaaccgattgtcattggtcgaat |
47467078 |
T |
|
| Q |
520 |
gcggataactcagcaaaatttgtgtttcatgcttagtgatgtccat |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47467077 |
gcggataactcagcaaaatttgtgtttcatgcttagttgtgtccat |
47467032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 317 - 554
Target Start/End: Original strand, 47227346 - 47227578
Alignment:
| Q |
317 |
tgtgccaatatctgaggtgtcaggggatcggacaactggtgcttttgttcaatgttcttggaagtttgctaatactccaacaaaatcatagcttgatgcc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
47227346 |
tgtgccaatatctgaggtgtcaggggatcggacaactgatggttttgttcattgttcatggaagtttgctaatacttcaacaaaagcataccttgatgcc |
47227445 |
T |
|
| Q |
417 |
agttttgtacctcagtgtttgagactcaaactagtttctggtctctttgaatgttgttaaaaatttaatcccata-taataaaaccgattgttattggtc |
515 |
Q |
| |
|
|| |||||||||| ||||||||| |||||||||||||||||||||||| | | ||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
47227446 |
ag-tttgtacctc--tgtttgagattcaaactagtttctggtctctttgca---taactcaaagttaatcccatacgaataaaactgattgttattggtt |
47227539 |
T |
|
| Q |
516 |
gaatgcggataactcagcaaaatttgtgtttcatgctta |
554 |
Q |
| |
|
|||| || ||| |||||| ||||||||||| |||||||| |
|
|
| T |
47227540 |
gaatacgtatagctcagccaaatttgtgttccatgctta |
47227578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 47227254 - 47227340
Alignment:
| Q |
175 |
tatgattccttttgttgttgcaaatatgactttgc---aacctgtcatgtgttgtaggaacaactaagataaaaaatcttgaaagtaa |
259 |
Q |
| |
|
|||||||||||| |||||||||| |||||| || | ||||| |||||||||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
47227254 |
tatgattccttt-gttgttgcaagtatgacatttctataacctctcatgtgttgtatgaacaacgaagataaagaatcttgaaagtaa |
47227340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 364 - 453
Target Start/End: Complemental strand, 46923195 - 46923105
Alignment:
| Q |
364 |
ttcaatgttcttggaagtttgctaatactcc-aacaaaatcatagcttgatgccagttttgtacctcagtgtttgagactcaaactagttt |
453 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
46923195 |
ttcaatgttcatggaagttttctaatactcccaacaaaagcatagctcgatgccaattttgtacctcagtgtttgagactcaaactagttt |
46923105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 493 - 554
Target Start/End: Complemental strand, 28831076 - 28831015
Alignment:
| Q |
493 |
aataaaaccgattgttattggtcgaatgcggataactcagcaaaatttgtgtttcatgctta |
554 |
Q |
| |
|
||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28831076 |
aataaaacctagtgttattggttgaatacggataactcagcaaaatttgtgtttcatgctta |
28831015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 554
Target Start/End: Complemental strand, 46923015 - 46922960
Alignment:
| Q |
493 |
aataaaaccgattgttattggtcgaatgcggataactcagcaaaatttgtgtttcatgctta |
554 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46923015 |
aataaaaccgattgttaatggtcg------gataactcagcaaaatttgtgtttcatgctta |
46922960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University