View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7022_low_4 (Length: 511)
Name: NF7022_low_4
Description: NF7022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7022_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 154 - 498
Target Start/End: Original strand, 379679 - 380018
Alignment:
| Q |
154 |
ggatctggtggaattccctgtgttgaagaaatagtcctgagtgccagtatttgacaagaaatagtccatcaaagaagcggaaacggaaacctaatagcca |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
379679 |
ggatctggtggaattccctgtgttgaagaaatagtcctgagtgccagtatttgacaagaaatagtccatcgaagaagcggaaacggaaacctaatagcca |
379778 |
T |
|
| Q |
254 |
gacagttggatttgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggtcaggtaaatatgttcaaatccatttgactattttcctggt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
379779 |
gacagttggatttgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggt-----aaatatgttcaaatccttttgaatattttcctggt |
379873 |
T |
|
| Q |
354 |
tacttggtagatacgctaaaagggtgtcttttgaaattactcagttctcatttagatgcattgtcacaaaaatagtcctgattgcatcaaaatattcgac |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
379874 |
tacttggtagatacgctaaaagggtgtcttttgaaattactcagttctcatttagatgcattgtcacaaaaatagtcccgattgcatcaaaatattcgac |
379973 |
T |
|
| Q |
454 |
tttgaaatgttttatgtgcatggagggagtattcattgatgtcca |
498 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
379974 |
tttaaaatgttttatgtgcatggagggagtattcattgatttcca |
380018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 379509 - 379648
Alignment:
| Q |
18 |
aaaaacgtgcattgaatcattttggtgtgaaaccaattggatttgaaagctaacttatattgcttgagaatgttggaaatgataaggaatctgacgaaga |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
379509 |
aaaaacatgcattgaatcattttggtgtgaaaccaattggatttgaaagctaacttatattgcttgagaatgttggaaatgataaggaatctgacgaaga |
379608 |
T |
|
| Q |
118 |
agaatcacaacaagtggtagatgtttcgatggataaggat |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
379609 |
agaatcacaacaagtggtagatgtttcgatggataaggat |
379648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 6298680 - 6298756
Alignment:
| Q |
237 |
cggaaacctaatagccagacagttggatttgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggt |
313 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6298680 |
cggaaacctaagagtcagacagttggatttgaagatgttcaaggtgttgattctgcaaaagtagaactcatggaggt |
6298756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 6305490 - 6305566
Alignment:
| Q |
237 |
cggaaacctaatagccagacagttggatttgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggt |
313 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6305490 |
cggaaacctaagagtcagacagttggatttgaagatgttcaaggtgttgattctgcaaaagtagaactcatggaggt |
6305566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 402 - 478
Target Start/End: Original strand, 6299225 - 6299301
Alignment:
| Q |
402 |
catttagatgcattgtcacaaaaatagtcctgattgcatcaaaatattcgactttgaaatgttttatgtgcatggag |
478 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
6299225 |
catttagatgcattgtcacaaaaataaccctgattgcatcaaaatattagactttgaaatgtttgatatgcatggag |
6299301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 402 - 478
Target Start/End: Original strand, 6306035 - 6306111
Alignment:
| Q |
402 |
catttagatgcattgtcacaaaaatagtcctgattgcatcaaaatattcgactttgaaatgttttatgtgcatggag |
478 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
6306035 |
catttagatgcattgtcacaaaaataaccctgattgcatcaaaatattagactttgaaatgtttgatatgcatggag |
6306111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 6298317 - 6298367
Alignment:
| Q |
107 |
tctgacgaagaagaatcacaacaagtggtagatgtttcgatggataaggat |
157 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6298317 |
tctgatgaagaagaatcacaacaagtagtagatgtttcgatggataaggat |
6298367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 6305127 - 6305177
Alignment:
| Q |
107 |
tctgacgaagaagaatcacaacaagtggtagatgtttcgatggataaggat |
157 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6305127 |
tctgatgaagaagaatcacaacaagtagtagatgtttcgatggataaggat |
6305177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University