View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7022_low_6 (Length: 373)
Name: NF7022_low_6
Description: NF7022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7022_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 22 - 328
Target Start/End: Original strand, 41685470 - 41685776
Alignment:
| Q |
22 |
cacgaaacctgagaatatgttccagaacattagaaagaaggacataacaattgcagcaatttggtagttcggtgtcagagccacagtcatcattccataa |
121 |
Q |
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| T |
41685470 |
cacgaaacctgagaatatgttccagaacattagaaagaaggacataacaattgcagcaatttggtagttcggtgtcagagccacagtcatcattccataa |
41685569 |
T |
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| Q |
122 |
agtgtgaagtagacaaaggacatgaatataaagtagtagaaccagatgaacttgtcagcttgccaagggaaccccatcattgagtaaaggataagggtat |
221 |
Q |
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| T |
41685570 |
agtgtgaagtagacaaaggacatgaatataaagtagtagaaccagatgaacttgtcagcttgccaagggaaccccatcattgagtaaaggataagggtat |
41685669 |
T |
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| Q |
222 |
acgctagtgtttggattgcaacgtatatacattctattgctacctgcaagtcaatgcttgtagatttcataagtttgcttagttattggaaattcaatta |
321 |
Q |
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| T |
41685670 |
acgctagtgtttggattgcaacgtatatacattctattgctacctgcaagtcaatccttgtagatttcgtaagtttgcttagttattggaaattcaatta |
41685769 |
T |
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| Q |
322 |
actggtg |
328 |
Q |
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| T |
41685770 |
actggtg |
41685776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 56 - 214
Target Start/End: Complemental strand, 19545414 - 19545256
Alignment:
| Q |
56 |
aagaaggacataacaattgcagcaatttggtagttcggtgtcagagccacagtcatcattccataaagtgtgaagtagacaaaggacatgaatataaagt |
155 |
Q |
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||||| |||||||| |||||||||||||| | ||| ||||||| |||||||||||||| |||||| ||||||||||||| ||| ||||||||||| ||| |
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| T |
19545414 |
aagaaagacataactattgcagcaatttgatggtttggtgtcaaagccacagtcatcagtccatatagtgtgaagtagagaaatgacatgaatatcaaga |
19545315 |
T |
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| Q |
156 |
agtagaaccagatgaacttgtcagcttgccaagggaaccccatcattgagtaaaggata |
214 |
Q |
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| T |
19545314 |
agtagaaccaaaagaaattttcaacttgcggtgggaacccaagcatccagtaaaggata |
19545256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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