View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7022_low_9 (Length: 296)

Name: NF7022_low_9
Description: NF7022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7022_low_9
NF7022_low_9
[»] chr8 (10 HSPs)
chr8 (18-280)||(2749956-2750220)
chr8 (18-138)||(7058190-7058307)
chr8 (18-138)||(4836573-4836690)
chr8 (18-138)||(4842018-4842135)
chr8 (18-138)||(8550580-8550697)
chr8 (49-138)||(32987345-32987434)
chr8 (49-137)||(39022052-39022140)
chr8 (75-138)||(7614144-7614207)
chr8 (49-134)||(15260751-15260836)
chr8 (18-84)||(1208831-1208892)
[»] chr4 (11 HSPs)
chr4 (18-138)||(51836962-51837080)
chr4 (18-138)||(45256051-45256170)
chr4 (49-137)||(637931-638019)
chr4 (60-138)||(22181156-22181234)
chr4 (40-138)||(27764316-27764414)
chr4 (60-136)||(4168436-4168512)
chr4 (49-111)||(21097243-21097305)
chr4 (49-138)||(26447312-26447401)
chr4 (60-121)||(18923352-18923413)
chr4 (65-138)||(38485590-38485663)
chr4 (75-138)||(36621627-36621690)
[»] chr7 (9 HSPs)
chr7 (18-138)||(46573372-46573489)
chr7 (49-138)||(30428949-30429038)
chr7 (49-138)||(46024103-46024192)
chr7 (53-136)||(15974840-15974923)
chr7 (75-138)||(33798007-33798070)
chr7 (99-138)||(5757463-5757502)
chr7 (99-138)||(32090654-32090693)
chr7 (18-84)||(48305358-48305421)
chr7 (18-80)||(48691118-48691177)
[»] chr3 (9 HSPs)
chr3 (18-138)||(52987522-52987639)
chr3 (18-138)||(51362311-51362427)
chr3 (36-138)||(39099273-39099375)
chr3 (18-138)||(7045173-7045289)
chr3 (49-138)||(50754082-50754171)
chr3 (40-137)||(8718178-8718275)
chr3 (40-137)||(9070065-9070162)
chr3 (49-138)||(19385215-19385304)
chr3 (77-138)||(16277342-16277403)
[»] chr1 (8 HSPs)
chr1 (18-138)||(22348115-22348232)
chr1 (49-138)||(23319985-23320074)
chr1 (18-138)||(179684-179801)
chr1 (18-136)||(8402181-8402298)
chr1 (49-138)||(18056860-18056949)
chr1 (49-137)||(45889673-45889761)
chr1 (75-138)||(30802472-30802535)
chr1 (99-138)||(37639418-37639457)
[»] chr5 (8 HSPs)
chr5 (53-138)||(28070057-28070142)
chr5 (49-138)||(13362846-13362935)
chr5 (36-138)||(23335593-23335696)
chr5 (49-138)||(2826967-2827056)
chr5 (49-115)||(42512273-42512339)
chr5 (49-102)||(25017132-25017185)
chr5 (99-138)||(18465506-18465545)
chr5 (98-138)||(16668743-16668783)
[»] chr6 (4 HSPs)
chr6 (18-138)||(24737565-24737680)
chr6 (49-134)||(877288-877373)
chr6 (18-138)||(33346243-33346360)
chr6 (99-138)||(18611265-18611304)
[»] scaffold0194 (1 HSPs)
scaffold0194 (49-138)||(27683-27772)
[»] chr2 (4 HSPs)
chr2 (18-138)||(18297983-18298100)
chr2 (49-138)||(25192968-25193057)
chr2 (49-136)||(20709852-20709939)
chr2 (18-84)||(4579698-4579761)
[»] scaffold0097 (1 HSPs)
scaffold0097 (49-136)||(13691-13778)
[»] scaffold0238 (1 HSPs)
scaffold0238 (65-138)||(25148-25221)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 2750220 - 2749956
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2750220 atgaagactcatctgaatt-gtagagagagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 2750122  T
Q  118 gaagtctatgattattacac--gaggaaattgccagaatcaaattggattttgactctaatgtcaaaatttgtaatgaagaaatcgaatttaatgcctaa 215  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2750121 gaagtctatgattattacacgagaggaaattgtcagaatcaaattggattttgactctaatttcaaaatttgtaatgaagaaatcgaatttaatgcctaa 2750022  T
Q  216 t-nnnnnnnngataaagagtgtttacaattaggtgcttgttagtaaaaatttataaggagtgatgt 280  Q
    |         |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2750021 taaaaaaaatgataaagagtgtttacgattaggtgcttgttagtaaaaatttataaggagtgatgt 2749956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 7058307 - 7058190
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| |||||| |||  ||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  7058307 atgaagactcatctgaatt-gtagagagag--agggagagctttatgttttagtgagagaagtgtttgaagcaaatgaagtttgatttggtgtagtttga 7058211  T
Q  118 gaagtctatgattattacacg 138  Q
    |||||||| ||||||||||||    
T  7058210 gaagtctaggattattacacg 7058190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 4836573 - 4836690
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| |||||| |||  ||||||||| |||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  4836573 atgaagactcatctgaatt-gtagagagag--agggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttga 4836669  T
Q  118 gaagtctatgattattacacg 138  Q
     |||  || ||||||||||||    
T  4836670 aaagcttaggattattacacg 4836690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 4842018 - 4842135
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| |||||| |||  ||||||||| |||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  4842018 atgaagactcatctgaatt-gtagagagag--agggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttga 4842114  T
Q  118 gaagtctatgattattacacg 138  Q
     |||  || ||||||||||||    
T  4842115 aaagcttaggattattacacg 4842135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 8550697 - 8550580
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| ||||||  ||  ||||||| | ||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  8550697 atgaagactcatctgaatt-gtagagaaag--agggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttga 8550601  T
Q  118 gaagtctatgattattacacg 138  Q
    ||||  |||||||||||||||    
T  8550600 gaagcttatgattattacacg 8550580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 32987345 - 32987434
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||| |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  32987345 gagggagagctttatgttttagttagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacg 32987434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 39022140 - 39022052
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacac 137  Q
    |||||||||| |||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  39022140 gagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacac 39022052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 7614207 - 7614144
Alignment:
Q  75 agaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7614207 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctatgattattacacg 7614144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 15260751 - 15260836
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattatta 134  Q
    |||||||||  |||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||  ||||||||    
T  15260751 gagggagagttttatattttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagccttggattatta 15260836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 1208892 - 1208831
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgttt 84  Q
    ||||||||||||||||||| |||||| |||    ||||||| |||||||||||||||||||||||||    
T  1208892 atgaagactcatctgaatt-gtagagagag----ggagagctttatgttttagtgagagaaatgttt 1208831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 51836962 - 51837080
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaa-tgaagtttgatttggtgtagtttg 116  Q
    ||||||||||||||||||| |||||| |||  ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  51836962 atgaagactcatctgaatt-gtagagagag--agggagagctttatgttttagtgagagaaatgtttgaagtaaaatgaagtttgatttggtgtagtttg 51837058  T
Q  117 agaagtctatgattattacacg 138  Q
    ||||| ||| ||||||||||||    
T  51837059 agaagcctaggattattacacg 51837080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 45256170 - 45256051
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| |||||| ||| | ||| |||| ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  45256170 atgaagactcatctgaatt-gtagagagagagggggggagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttgatgtagtttga 45256072  T
Q  118 gaagtctatgattattacacg 138  Q
     ||| ||| ||||||||||||    
T  45256071 aaagcctaggattattacacg 45256051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 638019 - 637931
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacac 137  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||  ||||||||||    
T  638019 gagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacac 637931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 22181156 - 22181234
Alignment:
Q  60 ttatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    ||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  22181156 ttatgttttagtgagagaaatgtttgaggcaaatgaagtttgatttggtgtagtttgagaaacctaggattattacacg 22181234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 27764414 - 27764316
Alignment:
Q  40 agagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||| ||| |||||||| | ||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||||  || ||||||||||||    
T  27764414 agagagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaataaggtttgatttggtgtagtttgagaagcgtaggattattacacg 27764316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 4168512 - 4168436
Alignment:
Q  60 ttatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattaca 136  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||  ||| ||||||||||    
T  4168512 ttatgttttagtgagagaaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaaacctaggattattaca 4168436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 21097305 - 21097243
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgta 111  Q
    |||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  21097305 gagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgta 21097243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 26447312 - 26447401
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||| | ||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||| |||| |||  |||||||||||    
T  26447312 gagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaaatttgatttggtgtaatttgtgaagcctagaattattacacg 26447401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 18923413 - 18923352
Alignment:
Q  60 ttatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaag 121  Q
    |||||||||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  18923413 ttatgttttagtgacagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaag 18923352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 38485590 - 38485663
Alignment:
Q  65 ttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||||||||||||| ||| ||||||||||||||||  |||| ||||||||| ||| ||||||||||||    
T  38485590 ttttagtgagagaaatgtttgaagcaaatgaagtttgatttaatgtattttgagaagcctaggattattacacg 38485663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 36621627 - 36621690
Alignment:
Q  75 agaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||| ||| |||||||||||||||||||||||||| |||||  || ||||||||||||    
T  36621627 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttaagaagcataggattattacacg 36621690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 46573372 - 46573489
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| |||||  |||  ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  46573372 atgaagactcatctgaatt-gtagatagag--agggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 46573468  T
Q  118 gaagtctatgattattacacg 138  Q
    |||| ||| ||||||||||||    
T  46573469 gaagcctaggattattacacg 46573489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 30429038 - 30428949
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    ||||| |||| |||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  30429038 gagggggagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacg 30428949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 46024192 - 46024103
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||| | ||||||||||||||||||||| ||| ||| ||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  46024192 gagggagaactttatgttttagtgagagaaatatttgaagcaaatgaagtttgatttaatgtagtttgagaagtctaggattattacacg 46024103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 15974840 - 15974923
Alignment:
Q  53 gagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattaca 136  Q
    |||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||| ||| ||| ||||||||||    
T  15974840 gagagctttatgttttagtgagagaaatgtttgaagcagatgaagtttgatttggtgtactttgataagcctaagattattaca 15974923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 33798070 - 33798007
Alignment:
Q  75 agaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||| ||| ||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  33798070 agaaatgtttgaagcaaatgaagtttgatttgatgtagtttgagaagtctaggattattacacg 33798007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 5757502 - 5757463
Alignment:
Q  99 ttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  5757502 ttgatttggtgtagtttgagaagtctaggattattacacg 5757463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 32090693 - 32090654
Alignment:
Q  99 ttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  32090693 ttgatttggtgtagtttgagaagcctatgattattacacg 32090654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 48305421 - 48305358
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgttt 84  Q
    ||||||||||||||||||| |||||| |||  ||||||||| |||||||||| ||||||||||||||    
T  48305421 atgaagactcatctgaatt-gtagagagag--agggagagctttatgttttattgagagaaatgttt 48305358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 48691177 - 48691118
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaat 80  Q
    ||||||||||||||||||| |||||| |||  ||||||||| |||||||||||||||||||||    
T  48691177 atgaagactcatctgaatt-gtagagagag--agggagagctttatgttttagtgagagaaat 48691118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 52987522 - 52987639
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| |||||| |||  ||||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  52987522 atgaagactcatctgaatt-gtagagagag--agggagagctttatgttttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttga 52987618  T
Q  118 gaagtctatgattattacacg 138  Q
    |||| ||| ||||||||||||    
T  52987619 gaagcctaggattattacacg 52987639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 51362311 - 51362427
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| |||||| |||  ||||| ||  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  51362311 atgaagactcatctgaatt-gtagagagag--agggaaagt-ttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 51362406  T
Q  118 gaagtctatgattattacacg 138  Q
    |||| ||| ||||||||||||    
T  51362407 gaagcctaggattattacacg 51362427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 39099375 - 39099273
Alignment:
Q  36 ttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattac 135  Q
    ||||||||  || |||||||||| ||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||| ||| |||||||||    
T  39099375 ttgtagagaaagagagggagagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttagtgtagtttgagaagcctaggattattac 39099276  T
Q  136 acg 138  Q
    |||    
T  39099275 acg 39099273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 7045173 - 7045289
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| |||||| |||  ||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||| |||||| |||    
T  7045173 atgaagactcatctgaatt-gtagagagag--agggagagctttatgttttagtgagagaaatgtttgaagcaaat-aagtttgatttgatgtagtctga 7045268  T
Q  118 gaagtctatgattattacacg 138  Q
    |||| ||| ||||||||||||    
T  7045269 gaagcctacgattattacacg 7045289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 50754171 - 50754082
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||| ||||||||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  50754171 gagggagagctttatgttttagtgagagaagtgtttgaatcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacg 50754082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 8718275 - 8718178
Alignment:
Q  40 agagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacac 137  Q
    |||| ||| |||||| ||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  8718275 agagagagagagggaaagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacac 8718178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 9070162 - 9070065
Alignment:
Q  40 agagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacac 137  Q
    |||| ||| |||||| ||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  9070162 agagagagagagggaaagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattattacac 9070065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 19385215 - 19385304
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||  ||||||||||||||| |||||| || ||| ||||||||||||||||| |||||||||||||| |||  |||||||||||    
T  19385215 gagggagagttttatgttttagtgagggaaatgattgaagcaaatgaagtttgatttgatgtagtttgagaagcctagaattattacacg 19385304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 16277342 - 16277403
Alignment:
Q  77 aaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||  || ||||||||||||    
T  16277342 aaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacacg 16277403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 22348232 - 22348115
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    |||||||||||| |||||| |||||| |||  ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  22348232 atgaagactcatatgaatt-gtagagagag--agggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttga 22348136  T
Q  118 gaagtctatgattattacacg 138  Q
    |||| ||| ||||||||||||    
T  22348135 gaagcctaggattattacacg 22348115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 23319985 - 23320074
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23319985 gagggatagctttatgttttagtgagagaaatgtttaaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacg 23320074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 179801 - 179684
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| |||||| |||  ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  179801 atgaagactcatctgaatt-gtagagagag--agggagagctttatgttttagtgagagaaatgttttaagcaaatgaagtttgatttggtgtagtttga 179705  T
Q  118 gaagtctatgattattacacg 138  Q
    ||||  |  ||||||||||||    
T  179704 gaagcttgggattattacacg 179684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 8402181 - 8402298
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| |||||| ||| ||| |||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||||    
T  8402181 atgaagactcatctgaatt-gtagagagagagagagagagctttatgttttagtgagagaaatgtttgaagcagatgaagtttgatttggtttagtttga 8402279  T
Q  118 gaagtctatgattattaca 136  Q
    |||  ||| ||||||||||    
T  8402280 gaaacctaggattattaca 8402298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 18056949 - 18056860
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||  ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  18056949 gagggagagttttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacg 18056860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 45889761 - 45889673
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacac 137  Q
    |||||||| | ||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| ||| |||||||||||    
T  45889761 gagggagaactttatgttttagtgagagaaatgtttgaaggaaatgaaatttgatttggtgtagtttgagaagcctaagattattacac 45889673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 30802535 - 30802472
Alignment:
Q  75 agaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||| ||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  30802535 agaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaagattattacacg 30802472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 37639457 - 37639418
Alignment:
Q  99 ttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  37639457 ttgatttggtgtagtttgagaagtctataattattacacg 37639418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 28070057 - 28070142
Alignment:
Q  53 gagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28070057 gagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacg 28070142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 13362935 - 13362846
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||| ||| ||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  13362935 gagggaaagctttatgttttagtgagagaaatgtttgaagcaaatgaattttgatttggtgtagtttgagaagcctatgattattacacg 13362846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 23335593 - 23335696
Alignment:
Q  36 ttgtagagggagtgagggagagcattatgtttt-agtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattatta 134  Q
    |||||||| ||| |||||||||| ||||||||| |||||||||||||||| | | ||||||| |||||||||||||||||||||||| ||||||||||||    
T  23335593 ttgtagagagagagagggagagctttatgtttttagtgagagaaatgtttgatgcaaatgaactttgatttggtgtagtttgagaagcctatgattatta 23335692  T
Q  135 cacg 138  Q
    ||||    
T  23335693 cacg 23335696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 2826967 - 2827056
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||| |||||||||||||||| |||||||| ||| ||||||| |||||||||||||||||||||||| ||| ||| ||||||||    
T  2826967 gagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaagataattacacg 2827056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 42512339 - 42512273
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagttt 115  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42512339 gagggagagctttaggttttagtgagagaaatgtttgaagtaaatgaagtttgatttggtgtagttt 42512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 25017132 - 25017185
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttga 102  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||    
T  25017132 gagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttga 25017185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 18465506 - 18465545
Alignment:
Q  99 ttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  18465506 ttgatttggtgtagtttgagaagtctaagattattacacg 18465545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 16668743 - 16668783
Alignment:
Q  98 tttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  16668743 tttgatttggtgtagtttgagaagcctaggattattacacg 16668783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 24737565 - 24737680
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| |||||| |||    ||||||  ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |    
T  24737565 atgaagactcatctgaatt-gtagagagag----ggagagttttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttaa 24737659  T
Q  118 gaagtctatgattattacacg 138  Q
    |||| ||| ||||||||||||    
T  24737660 gaagcctaggattattacacg 24737680  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 877373 - 877288
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattatta 134  Q
    |||||||||| || |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  877373 gagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattatta 877288  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 33346243 - 33346360
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    ||||||||||||||||||| |||||| |||  ||||||| | ||||||||||||||||||||||||| ||| ||| |||||||||||||  |||||||||    
T  33346243 atgaagactcatctgaatt-gtagagagag--agggagaactttatgttttagtgagagaaatgtttgaagcaaacgaagtttgatttgacgtagtttga 33346339  T
Q  118 gaagtctatgattattacacg 138  Q
    |||| |||| |||||||||||    
T  33346340 gaagcctataattattacacg 33346360  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 18611304 - 18611265
Alignment:
Q  99 ttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  18611304 ttgatttggtgtggtttgagaagcctatgattattacacg 18611265  T

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Target: scaffold0194 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 27772 - 27683
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||  ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||  |||||||||||    
T  27772 gagggagagatttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctagaattattacacg 27683  T

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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 18297983 - 18298100
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttga 117  Q
    |||||||||||||| |||| |||||| |||  ||||||||  |||||||||||||||||||| | || ||| ||||||||||||||||||||||||||||    
T  18297983 atgaagactcatctaaatt-gtagagagag--agggagagatttatgttttagtgagagaaacgcttgaagcaaatgaagtttgatttggtgtagtttga 18298079  T
Q  118 gaagtctatgattattacacg 138  Q
    |||| ||| ||||||||||||    
T  18298080 gaagcctaggattattacacg 18298100  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 25193057 - 25192968
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||  |||||||||||    
T  25193057 gagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttgagaagcctagaattattacacg 25192968  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 20709939 - 20709852
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattaca 136  Q
    |||||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  || ||||||||||    
T  20709939 gagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattaca 20709852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 4579698 - 4579761
Alignment:
Q  18 atgaagactcatctgaatttgtagagggagtgagggagagcattatgttttagtgagagaaatgttt 84  Q
    ||||||||||||||||||| |||||| |||  ||||||||| |||||||||||||||||||||||||    
T  4579698 atgaagactcatctgaatt-gtagagagag--agggagagctttatgttttagtgagagaaatgttt 4579761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 13778 - 13691
Alignment:
Q  49 gagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattaca 136  Q
    |||||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  || ||||||||||    
T  13778 gagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattaca 13691  T

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Target: scaffold0238 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 25148 - 25221
Alignment:
Q  65 ttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattattacacg 138  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||  ||| |||||| |||||    
T  25148 ttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctaagattatgacacg 25221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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