View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7023_high_1 (Length: 638)
Name: NF7023_high_1
Description: NF7023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7023_high_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 130 - 638
Target Start/End: Complemental strand, 5243550 - 5243043
Alignment:
| Q |
130 |
actaccaccaaagaaagtcataacaagacattatatggaaaataaacaaacctaagacacaaacattgactaccacatgctagctatttattagaaaaac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5243550 |
actaccaccaaagaaagtcataacaagacattatatggaaaataaacaaacctaagacacaaacattgactaccacatgctagctatttattagaaaaac |
5243451 |
T |
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| Q |
230 |
taaannnnnnnnnnnnnnn--tttgatcattggttagctatatatataaccaactaacagcatgacctaaaacaaactagtttttgacacacattaaagt |
327 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5243450 |
taaaacacacacaacacacactttgatcattggttagctatatatataaccaactaacagcatgacctaaaacaaactagtttttgacacacattaaagt |
5243351 |
T |
|
| Q |
328 |
tagctagcacataagaggtgatgatgatggatcacttgttctggctcctnnnnnnnnnnnnnnnnnnngtcttggacttggactcatcaatatcaatacc |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
5243350 |
tagctagcacataagaggtgatgatgatggatcacttgttctggctcctaccaccaccaccacca---gtcttgaacttggactcatcaatatcaatacc |
5243254 |
T |
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| Q |
428 |
ttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgatacccttctgtccctagttgctccttcctt |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5243253 |
ttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgatacccttctgtccctagttgctccttcctt |
5243154 |
T |
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| Q |
528 |
gtctgccctcccttgctccttcctttaattaaacatcaaaaattagtatcaaattttaagtatataataatatgcattaatcctacactaatgattcacc |
627 |
Q |
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| T |
5243153 |
gtctgccctcccttgctccttcctttaattaaacaccaaaaattagtatcaaattttaagtatataataatatgcattaatcataaactaatgtataacc |
5243054 |
T |
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| Q |
628 |
ttcagcaagat |
638 |
Q |
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||||||||||| |
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| T |
5243053 |
ttcagcaagat |
5243043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 5243610 - 5243554
Alignment:
| Q |
4 |
aataaggagagcgcataacatcaacacaacgtg-tttaagataactaaactcttaac |
59 |
Q |
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|||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
5243610 |
aataagaagaacgcataacatcaacacaacgcgttttaagataactaaactcttaac |
5243554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 403 - 538
Target Start/End: Original strand, 25522986 - 25523121
Alignment:
| Q |
403 |
acttggactcatcaatatcaataccttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgataccc |
502 |
Q |
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||||||| |||||||| || || |||||||| ||||||||| | | || ||||| |||||||| || |||||||||||||| ||||| || |||||||| |
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| T |
25522986 |
acttggattcatcaatgtctattccttcctcagcagcacgttgttcaccagacttatccatagtactgagtcctcctttacggcccatttcttgataccc |
25523085 |
T |
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| Q |
503 |
ttctgtccctagttgctccttccttgtctgccctcc |
538 |
Q |
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|||| |||| | ||||| ||||||||||||||||| |
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| T |
25523086 |
ttctctccccatctgctctttccttgtctgccctcc |
25523121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 538
Target Start/End: Original strand, 25523128 - 25523181
Alignment:
| Q |
485 |
tcccatctcctgatacccttctgtccctagttgctccttccttgtctgccctcc |
538 |
Q |
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||||||||| ||||| ||||||| ||||| |||| |||||||||||||||||| |
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| T |
25523128 |
tcccatctcttgatatccttctgaccctaactgctgcttccttgtctgccctcc |
25523181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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