View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7023_high_7 (Length: 273)
Name: NF7023_high_7
Description: NF7023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7023_high_7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 5242800 - 5243049
Alignment:
| Q |
18 |
tatttaatttatttgtcacattttgatacatatctatataaaccccttaaccatttgttttaaccacatagcttcgagtacttactgatcaagaaagtga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5242800 |
tatttaatttatttgtcacattttgata----tctatataaaccccttaaccatttattttaaccaca--gcttcgagtacttactgatcaagaaagtga |
5242893 |
T |
|
| Q |
118 |
cactacatagcataatcaaccaatccaaatttgagaaaaaacaatggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaaagcaaggagag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5242894 |
cactacatagcataatcaaccaatccaaatttgagaaaaaacaatggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaaagcaaggagag |
5242993 |
T |
|
| Q |
218 |
actgttgttcctggtggcactggtggcgagagcattgaggctcaggaacatcttgc |
273 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
5242994 |
actgttgttcctggtggcactggtggcaagagccttgaggctcaggaacatcttgc |
5243049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 2954117 - 2954053
Alignment:
| Q |
161 |
atggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaaagcaaggagagactgttgt |
225 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| ||||||||| | |||||| ||||||| |
|
|
| T |
2954117 |
atggcatctcaacaacaaaagtgacaagagcttgaggaaaaggcaaaggagggagagcctgttgt |
2954053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 25523391 - 25523309
Alignment:
| Q |
161 |
atggcatctaaacaacaaaaccgacaagagcttgaggagaaggcaaagcaaggagagactgttgttcctggtggcactggtgg |
243 |
Q |
| |
|
||||| ||| ||||||||||||| |||| |||||||||| ||||| || || || |||||| ||||||||||||| ||||| |
|
|
| T |
25523391 |
atggcgtctcaacaacaaaaccgtgaagaacttgaggagagggcaaggcttggtgaaactgttattcctggtggcacaggtgg |
25523309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University