View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7023_low_10 (Length: 242)
Name: NF7023_low_10
Description: NF7023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7023_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 44842816 - 44842612
Alignment:
| Q |
17 |
ctgtgacgaccaactaaggagaaggtttcttgaactgtttcagaaacaacttaaatatgaggacgagcttatgcgtgttcgtgctaagttgaaatttgtt |
116 |
Q |
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| T |
44842816 |
ctgtgacgaccaactaaggagaaggtttcttgaactgtttcagaaacaacttaaatatgaggacgagcttatgcgtgttcgtgctaagttgaaatttgtt |
44842717 |
T |
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| Q |
117 |
ctgaaggccagagccaaactggcttcgctagagttcaacatcttttcttgcacaattattcaaaagaaagttaaaaaggtacaatacgacctaccctttt |
216 |
Q |
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| T |
44842716 |
cttaaggccagagccaaactggcttcgctagagttcaacatcttttcttgcacaattattcaaaagaaagtt-aaaaggtacaatacgacctaccctttt |
44842618 |
T |
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| Q |
217 |
tctatg |
222 |
Q |
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|||||| |
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| T |
44842617 |
tctatg |
44842612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 43570145 - 43570083
Alignment:
| Q |
102 |
aagttgaaatttgttctgaaggccagagccaaactggcttcgctagagttcaacatcttttct |
164 |
Q |
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| T |
43570145 |
aagttgaaagatgctctaaaggccagagccaaactggcttctttagagttcaatattttttct |
43570083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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