View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7023_low_3 (Length: 536)
Name: NF7023_low_3
Description: NF7023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7023_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 22 - 476
Target Start/End: Original strand, 15496619 - 15497079
Alignment:
| Q |
22 |
atgagagccaactatcgggatgaagacgatatttttgtccaatcctccaagaagatctcatctaaaatacactaatgtcacccaggtaaaatccaaggag |
121 |
Q |
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| T |
15496619 |
atgagagccaactatcgggatgaagacgatattttcgtccaatcctccaagaagatttcatctaaaatgcactaatgtcacccaggtaaaatccaaggag |
15496718 |
T |
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| Q |
122 |
tatggggtctcaaccgctcacaagtttctactaaattagacattaa---caacaacaataaaaagagtataaactaagttgtaccagagaacaaacacat |
218 |
Q |
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| T |
15496719 |
tatagggtctcaatcgctcacaaatttctactaaattagacattaataacaacaacaataaaaagggtataaattaagttgtatcagagaacaaacgcat |
15496818 |
T |
|
| Q |
219 |
atttgaaagagaataagtacaccatgtgagttcatacgaaaacaattataaatattatagactaaaaaattataaatattatagattgtctttttaaatt |
318 |
Q |
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| T |
15496819 |
atttaaaagagagtaagtacaccatgtgagttcatacgaaaacaattataaatattatagactaaaaaattataaatattatagattgtctttttaaatt |
15496918 |
T |
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| Q |
319 |
aggcaaaac--tataacaagtatcgtttaacttaatttaagctttaaacacgtctttttatatttttcttttgtattaacatta---gtcatttatcttg |
413 |
Q |
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| T |
15496919 |
aggcaaaactatataacaagtatcgtttaacttaatttaagctttaaacacgtctttttata--tttctttcgtattaacattagacgtcatttatcttg |
15497016 |
T |
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| Q |
414 |
aaaagtatttacaaagagtataagtttgattcttttctatttcagctacaaatttatgtacat |
476 |
Q |
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| T |
15497017 |
aaaaatatttacaaagagtataagtttgattcttttctatttcagctacaaatttatgtacat |
15497079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 105
Target Start/End: Original strand, 26847218 - 26847246
Alignment:
| Q |
77 |
tctcatctaaaatacactaatgtcaccca |
105 |
Q |
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| T |
26847218 |
tctcatctaaaatacactaatgtcaccca |
26847246 |
T |
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