View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7023_low_4 (Length: 451)
Name: NF7023_low_4
Description: NF7023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7023_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 3 - 434
Target Start/End: Complemental strand, 29413138 - 29412707
Alignment:
| Q |
3 |
cttttttggtcaacctagctgccctacctctcccctgcctgcataattgcttttgctatgtatgtttgtttttcactttttggttttgtagttaaattag |
102 |
Q |
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| T |
29413138 |
cttttttggtcaacctaactgccctacctctcccctgcctgcataattgtttttgctacgtgcgtttgtttttcactttttggttttgtagtaaaattag |
29413039 |
T |
|
| Q |
103 |
aactctgatatcaactttttgatgaagacaaaagatggcaggaactgaagatgaaggggacaagtcttctcgcggtaatgactgggaggttgtatctctc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
29413038 |
aactctgatatcaactttttgatgaagacaaaagatggcaggaactgaagatgaaggggaaaagtcttctcgcagtaatgactgggaggttgtatctctc |
29412939 |
T |
|
| Q |
203 |
acagcatcaacttatgcagctgctcctggtccacgtgaagttgaattgaaggatgatgacaaggaagatgcatacgcaataaatgaagctgagacatcga |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29412938 |
acagcatcaacttatgcagctgctcctggtccacgtgaagttgagttgaaggatgatgacaaggaagatgcatacgcaataaatgaagctgagacatcga |
29412839 |
T |
|
| Q |
303 |
acactttgttcatgtctggtcacttcgcctttccaccaagtaagcatgaaaacttgccattggaaatggactatagtgagattcagaatgaatccggaga |
402 |
Q |
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| T |
29412838 |
acgctttgttcatgtctggtcacttcgcctttccaccaagtaagcatgaaaacttgccattggaaaaggactatagtgagattcagaatgaatccggaga |
29412739 |
T |
|
| Q |
403 |
caaaggtgttgcctttgaagagacttatgaag |
434 |
Q |
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| T |
29412738 |
caaaggtgttgcctttgaagagacttatgaag |
29412707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 3 - 434
Target Start/End: Original strand, 10161035 - 10161472
Alignment:
| Q |
3 |
cttttttggtcaacctagctgccctacctctcccctgcctgcataattgcttttgctatgtatgtttgtttttcacttttt------ggttttgtagtta |
96 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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|
| T |
10161035 |
cttttttgatcaacctaactgccctacctctcccctgcctgcataattgcttttgctatgtatgtttgtttttcactttttggttttggttttgtagtaa |
10161134 |
T |
|
| Q |
97 |
aattagaactctgatatcaactttttgatgaagacaaaagatggcaggaactgaagatgaaggggacaagtcttctcgcggtaatgactgggaggttgta |
196 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10161135 |
aattagaactctgatagcaactttttgatgaagacaaaagatggcaggaactgaaaatgaaggggacaagtcttctcgcggtaatgactgggaggttgta |
10161234 |
T |
|
| Q |
197 |
tctctcacagcatcaacttatgcagctgctcctggtccacgtgaagttgaattgaaggatgatgacaaggaagatgcatacgcaataaatgaagctgaga |
296 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10161235 |
tctctcacaacatcaacttatgcagctactcctggtccacgtgaagttgagttgaaggatgatgacaaggaagatgcatacgcaataaatgaagctgaga |
10161334 |
T |
|
| Q |
297 |
catcgaacactttgttcatgtctggtcacttcgcctttccaccaagtaagcatgaaaacttgccattggaaatggactatagtgagattcagaatgaatc |
396 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
10161335 |
catcgaacgctttgttcatgtctggtcacttcgcctttccaccaagtaagcatgaaaacttgccattggaaacagactatagtgagattcataatgaatc |
10161434 |
T |
|
| Q |
397 |
cggagacaaaggtgttgcctttgaagagacttatgaag |
434 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
10161435 |
cggagacaaaggtgttgcctttgaagagacttatgaag |
10161472 |
T |
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