View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7023_low_5 (Length: 360)
Name: NF7023_low_5
Description: NF7023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7023_low_5 |
 | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 24638831 - 24638488
Alignment:
| Q |
1 |
caaacgcatcatgtgttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgatggtgattgg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638831 |
caaacgcatcatgtgttatgttcagggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgatggtgattgg |
24638732 |
T |
|
| Q |
101 |
ggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638731 |
ggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctc |
24638632 |
T |
|
| Q |
201 |
actccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttccca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638631 |
actccagtgcagaagccggatacagaggtgttgctaatatggtttctgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttccca |
24638532 |
T |
|
| Q |
301 |
ggctactttggtgtattgtgataatgttaatgccatctaccttg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638531 |
ggctactttggtgtattgtgataatgttaatgccatctaccttg |
24638488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 24647760 - 24647417
Alignment:
| Q |
1 |
caaacgcatcatgtgttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgatggtgattgg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647760 |
caaacgcatcatgtgttatgttcagggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgatggtgattgg |
24647661 |
T |
|
| Q |
101 |
ggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctc |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24647660 |
ggtggatgtcttgacacctgtcattctacttccgtctattgtgtgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacactttctc |
24647561 |
T |
|
| Q |
201 |
actccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttccca |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647560 |
aatccagtgcagaagccggatacagaggtgttgctaatatggtttctgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttccca |
24647461 |
T |
|
| Q |
301 |
ggctactttggtgtattgtgataatgttaatgccatctaccttg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647460 |
ggctactttggtgtattgtgataatgttaatgccatctaccttg |
24647417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 48099945 - 48099603
Alignment:
| Q |
1 |
caaacgcatcatgtgttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgatggtgattgg |
100 |
Q |
| |
|
|||||||||| | ||||||| | ||| ||| ||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
48099945 |
caaacgcatcctacgttatgtgcagggcaccttacactatggtttgcatctttatccatcccgtattgagaaacttatctcctatactgatgctgattgg |
48099846 |
T |
|
| Q |
101 |
ggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctc |
200 |
Q |
| |
|
||||||||||| |||||| ||| |||||| || | ||||||| ||||||||||||||||||| | || ||||||||||| ||||||||||| ||||| | |
|
|
| T |
48099845 |
ggtggatgtccagacacccgtcgttctacctctggctattgtgtgtttcttggtgacaacctcatctcctggtcttccaagcgacaacccacactttcgc |
48099746 |
T |
|
| Q |
201 |
actccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttccca |
300 |
Q |
| |
|
||| ||||||||||| | ||||| |||||||||||| |||| | |||||||||||||||||| || ||||||||||| |||| | |||||| || || |
|
|
| T |
48099745 |
gctctagtgcagaagctgagtacaggggtgttgctaatgtggtatctgaatcttgttggcttcgtaaccttctcttggaacttcatttcccactctctca |
48099646 |
T |
|
| Q |
301 |
ggctactttggtgtattgtgataatgttaatgccatctacctt |
343 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
48099645 |
agctactttggtgtattgtgataatgttagtgccatttacctt |
48099603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 20620205 - 20620531
Alignment:
| Q |
1 |
caaacgcatcatgtgttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgatggtgattgg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
20620205 |
caaacgcatcatgtgttatgttctgggcaccctacactatggtttgcatctctatccatcccctattgagaaacttatctcctacactgatgctgattgg |
20620304 |
T |
|
| Q |
101 |
ggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctc |
200 |
Q |
| |
|
||||||||||||||||| || ||| || || | ||||||| ||||||||||||||||||| | ||||| |||| |||||||||||||||||||||| |
|
|
| T |
20620305 |
ggtggatgtcctgacactcgttgttcgacctctggctattgtgtgtttcttggtgacaacctcatttcatgatctttcaaacgacaacccacgctttctt |
20620404 |
T |
|
| Q |
201 |
actccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttccca |
300 |
Q |
| |
|
||||| ||||||||| |||| ||| |||||| ||| || ||||||||||||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
20620405 |
gctccaatgcagaagctaaatac------------aatgtggtttctgagtcgtgttggcttcgcaatcttctcttagagtttcactacccactttccca |
20620492 |
T |
|
| Q |
301 |
ggctactttggtgtattgtgataatgttaatgccatcta |
339 |
Q |
| |
|
|||| |||||| ||| || |||||||||| | ||||||| |
|
|
| T |
20620493 |
ggctcctttggagtactgcgataatgttacttccatcta |
20620531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 44387102 - 44387444
Alignment:
| Q |
1 |
caaacgcatcatgtgttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgatggtgattgg |
100 |
Q |
| |
|
|||||||||| || ||||||||| || ||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
44387102 |
caaacgcatcctgcgttatgttcaaggcaccctacactatggtttgcatctctatctatctcctattgagaaacttatctcctacactgatgctgattgg |
44387201 |
T |
|
| Q |
101 |
ggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctc |
200 |
Q |
| |
|
|||||||||||||||||| ||| ||| || | | ||||||| ||||||||||||||||||| | || ||||||||||||||||||||||| |||||| |
|
|
| T |
44387202 |
ggtggatgtcctgacacccgtcgttcgaccgctggctattgtgtgtttcttggtgacaacctcatttcttggtcttccaaacgacaacccacactttctt |
44387301 |
T |
|
| Q |
201 |
actccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttccca |
300 |
Q |
| |
|
||| ||||||||||| || | |||||||||||| |||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
44387302 |
gctcaagtgcagaagctaagtatatgggtgttgctaatgtggtttctgaatcatgttggcttcgcaatcttctcttagagcttcactacccactttccca |
44387401 |
T |
|
| Q |
301 |
ggctactttggtgtattgtgataatgttaatgccatctacctt |
343 |
Q |
| |
|
| ||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44387402 |
gactagtttggtgtattgtgataatgttagtgccatctacctt |
44387444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 9932663 - 9932321
Alignment:
| Q |
1 |
caaacgcatcatgtgttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgatggtgattgg |
100 |
Q |
| |
|
|||||||||| | ||||||| | ||| ||| ||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
9932663 |
caaacgcatcctacgttatgtgcagggcaccttacactatggtttgcatctttatccatcccgtattgagaaacttatctcctatactgatgctgattgg |
9932564 |
T |
|
| Q |
101 |
ggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctc |
200 |
Q |
| |
|
||||||||||| |||||| ||| |||||| || | ||||||| ||||||||||||||||||| | || ||||||||||| ||||||||||| ||||| | |
|
|
| T |
9932563 |
ggtggatgtccagacacccgtcgttctacctctggctattgtgtgtttcttggtgacaacctcatctcctggtcttccaagcgacaacccacactttcgc |
9932464 |
T |
|
| Q |
201 |
actccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttccca |
300 |
Q |
| |
|
||| ||||||||||| | ||||| |||||||||||| |||| | |||||||||||||||||| || ||||||||||| |||| | |||||| || || |
|
|
| T |
9932463 |
gctctagtgcagaagctgagtacaggggtgttgctaatgtggtatctgaatcttgttggcttcgtaaccttctcttggaacttcatttcccactctctca |
9932364 |
T |
|
| Q |
301 |
ggctactttggtgtattgtgataatgttaatgccatctacctt |
343 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
9932363 |
agctactttggtgtattgtgataatgttagtgccatttacctt |
9932321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 95 - 342
Target Start/End: Original strand, 24209828 - 24210075
Alignment:
| Q |
95 |
gattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgc |
194 |
Q |
| |
|
|||||||||||||||||||||||| | | ||| ||||| | || ||| | ||||| ||||||||||| | | ||||| ||||| |||||||||| | |
|
|
| T |
24209828 |
gattggggtggatgtcctgacacccgacgttccacttctggatactgtgtctttctcggtgacaacctcatcgcttggtcctccaagagacaacccactc |
24209927 |
T |
|
| Q |
195 |
tttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccact |
294 |
Q |
| |
|
| |||| || ||||| ||||| | ||| ||||||||||||||| | || | ||| || ||||||||||| ||||| | ||||||| | || || | |
|
|
| T |
24209928 |
tctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaatctcttactggagctccactttcctat |
24210027 |
T |
|
| Q |
295 |
ttcccaggctactttggtgtattgtgataatgttaatgccatctacct |
342 |
Q |
| |
|
| | ||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
24210028 |
tcctcaggctactttggtgtattgtgacaatgttagtgccatctacct |
24210075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 95 - 342
Target Start/End: Original strand, 45029605 - 45029852
Alignment:
| Q |
95 |
gattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgc |
194 |
Q |
| |
|
|||||||||||||||||||||||| | | ||| ||||| | || ||| | ||||| ||||||||||| | | ||||| ||||| |||||||||| | |
|
|
| T |
45029605 |
gattggggtggatgtcctgacacccgacgttccacttctggatactgtgtctttctcggtgacaacctcatcgcttggtcctccaagagacaacccactc |
45029704 |
T |
|
| Q |
195 |
tttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccact |
294 |
Q |
| |
|
| |||| || ||||| ||||| | ||| ||||||||||||||| | || | ||| || ||||||||||| ||||| | ||||||| | || || | |
|
|
| T |
45029705 |
tctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaatctcttactggagctccactttcctat |
45029804 |
T |
|
| Q |
295 |
ttcccaggctactttggtgtattgtgataatgttaatgccatctacct |
342 |
Q |
| |
|
| | ||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
45029805 |
tcctcaggctactttggtgtattgtgacaatgttagtgccatctacct |
45029852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 95 - 342
Target Start/End: Original strand, 45034456 - 45034703
Alignment:
| Q |
95 |
gattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgc |
194 |
Q |
| |
|
|||||||||||||||||||||||| | | ||| ||||| | || ||| | ||||| ||||||||||| | | ||||| ||||| |||||||||| | |
|
|
| T |
45034456 |
gattggggtggatgtcctgacacccgacgttccacttctggatactgtgtctttctcggtgacaacctcatcgcttggtcctccaagagacaacccactc |
45034555 |
T |
|
| Q |
195 |
tttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccact |
294 |
Q |
| |
|
| |||| || ||||| ||||| | ||| ||||||||||||||| | || | ||| || ||||||||||| ||||| | ||||||| | || || | |
|
|
| T |
45034556 |
tctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaatctcttactggagctccactttcctat |
45034655 |
T |
|
| Q |
295 |
ttcccaggctactttggtgtattgtgataatgttaatgccatctacct |
342 |
Q |
| |
|
| | ||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
45034656 |
tcctcaggctactttggtgtattgtgacaatgttagtgccatctacct |
45034703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 7324652 - 7324509
Alignment:
| Q |
137 |
tattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgcta |
236 |
Q |
| |
|
|||||| | |||||||||||||| || ||||||||||||||||| |||||||| | |||| ||| ||||| ||||||| |||| |||||||||| | |
|
|
| T |
7324652 |
tattgtgtatttcttggtgacaatctactctcatggtcttccaaacgccaacccacattatctcgctctagtgctgaagccgaataccgaggtgttgcca |
7324553 |
T |
|
| Q |
237 |
atatggtttttgaatcttgttggcttcgcaatcttctcttggag |
280 |
Q |
| |
|
|| | || | ||| ||||||||| | ||||| || || |||||| |
|
|
| T |
7324552 |
atgtcgtatctgagtcttgttggttacgcaacctacttttggag |
7324509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 30332255 - 30332361
Alignment:
| Q |
167 |
tcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgca |
266 |
Q |
| |
|
||||||||| | ||||||||||| || ||||||| || ||||||||||| | || | |||||||||||| | |||| ||||||||||||||||| | |
|
|
| T |
30332255 |
tcatggtctgctaaacgacaaccaactctttctcgttctagtgcagaagcggagtatcgtggtgttgctaatgttgtttcagaatcttgttggcttcgaa |
30332354 |
T |
|
| Q |
267 |
atcttct |
273 |
Q |
| |
|
||||||| |
|
|
| T |
30332355 |
atcttct |
30332361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 23583751 - 23584093
Alignment:
| Q |
1 |
caaacgcatcatgtgttatgttcggggaaccctacactacggtttgcatctctatccatcccctattgagaaacttatcttctatactgatggtgattgg |
100 |
Q |
| |
|
|||||||||| || |||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| | |
|
|
| T |
23583751 |
caaacgcatcttgcattatgttcagggcaccctacactatggtttgcatctctatccattccctattgagaaacttatctcctatactgatgctgattcg |
23583850 |
T |
|
| Q |
101 |
ggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctc |
200 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| | ||||||| | ||||||||||| ||||| | || ||||||||||| |||||||||| ||||||| |
|
|
| T |
23583851 |
ggtggatgtcctgacacccgtcgttctacttctggctattgtgtatttcttggtgataacctcatttcctggtcttccaagagacaacccacactttctc |
23583950 |
T |
|
| Q |
201 |
actccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccactttccca |
300 |
Q |
| |
|
|| |||||| |||| | ||||| |||||||||||| |||| | ||||||||||||| ||||||| |||||||||||||||| | |||||| || || |
|
|
| T |
23583951 |
ggtctagtgcaaaagctgagtacaggggtgttgctaatgtggtatctgaatcttgttggtttcgcaaccttctcttggagcttcatttcccactctctca |
23584050 |
T |
|
| Q |
301 |
ggctactttggtgtattgtgataatgttaatgccatctacctt |
343 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23584051 |
ggctaccttggtgtattgtgataatgttagtgccatctacctt |
23584093 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 74 - 273
Target Start/End: Complemental strand, 40270846 - 40270647
Alignment:
| Q |
74 |
cttatcttctatactgatggtgattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggt |
173 |
Q |
| |
|
||||||| ||| ||||| | ||||||||||||||||||||||||| | | |||||| || | |||||| | ||||| ||||||||||||| || |||| |
|
|
| T |
40270846 |
cttatctcctacactgacgctgattggggtggatgtcctgacaccagacgttctacatctggttattgtgtttttctaggtgacaaccttatttcttggt |
40270747 |
T |
|
| Q |
174 |
cttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttct |
273 |
Q |
| |
|
|||||||||| || || || || || | || ||||| ||||| | ||| ||||||||||| ||| | || | |||||| |||||| ||||||||||||| |
|
|
| T |
40270746 |
cttccaaacggcagccaactctctcccgttctagtgctgaagctgaatatagaggtgttgcaaatgttgtctctgaatcgtgttggattcgcaatcttct |
40270647 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 273
Target Start/End: Complemental strand, 32307406 - 32307300
Alignment:
| Q |
167 |
tcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgca |
266 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||| || ||||||||||| | || | |||||||||||| | |||| |||||||||||||||||| | |
|
|
| T |
32307406 |
tcatggtctgccaaacgacaaccaactctttctcgttctagtgcagaagcggagtatcgtggtgttgctaatgttgtttctgaatcttgttggcttcgaa |
32307307 |
T |
|
| Q |
267 |
atcttct |
273 |
Q |
| |
|
| ||||| |
|
|
| T |
32307306 |
accttct |
32307300 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 94 - 336
Target Start/End: Original strand, 40631 - 40873
Alignment:
| Q |
94 |
tgattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacg |
193 |
Q |
| |
|
|||||||||| |||||||||| ||| | | |||||| || | || ||| | ||||||||||||||||||| || |||||||||||| | || ||||| |
|
|
| T |
40631 |
tgattggggtagatgtcctgatacccgacgttctacatctgggtactgtgtttttcttggtgacaaccttatctcttggtcttccaaaaggcagcccact |
40730 |
T |
|
| Q |
194 |
ctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccac |
293 |
Q |
| |
|
|| |||||||||||||| ||||||| ||| ||||||||||||||| | || | ||| || |||||| |||| || ||| | |||||||||| | || |
|
|
| T |
40731 |
ctctctcactccagtgctgaagccgaatatagaggtgttgctaatgttgtatctgagtcatgttggattcgtaaccttttattggagcttcattttccta |
40830 |
T |
|
| Q |
294 |
tttcccaggctactttggtgtattgtgataatgttaatgccat |
336 |
Q |
| |
|
|| | ||||| ||||||||||||||||| ||||||| |||||| |
|
|
| T |
40831 |
ttcctcaggccactttggtgtattgtgacaatgttagtgccat |
40873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 95 - 342
Target Start/End: Original strand, 33165844 - 33166091
Alignment:
| Q |
95 |
gattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgc |
194 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||| | || ||| | ||||| ||||||||||| | | ||||| ||||| |||||||||| | |
|
|
| T |
33165844 |
gattggggtggatgtcctgacacctgacgttccacttctggatactgtgtctttctcggtgacaacctcatcgcttggtcctccaagagacaacccactc |
33165943 |
T |
|
| Q |
195 |
tttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccact |
294 |
Q |
| |
|
| |||| || ||||| ||||| | ||| ||||||||||||||| | || | ||| || ||||||||||| ||||| | |||||| | || || | |
|
|
| T |
33165944 |
tctctcggtctagtgctgaagcggaatatagaggtgttgctaatgttgtgtctgagtcatgttggcttcgtaatctcttacaggagctccactttcctat |
33166043 |
T |
|
| Q |
295 |
ttcccaggctactttggtgtattgtgataatgttaatgccatctacct |
342 |
Q |
| |
|
| | ||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
33166044 |
tcctcaggctactttggtgtattgtgacaatgttagtgccatctacct |
33166091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 339
Target Start/End: Original strand, 16594463 - 16594725
Alignment:
| Q |
77 |
atcttctatactgatggtgattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtctt |
176 |
Q |
| |
|
|||| ||| ||||| | |||||||||||||||||||||||| | | ||||| || | || ||| | ||||| ||||||||||||| || ||||||| |
|
|
| T |
16594463 |
atctcctacactgacgctgattggggtggatgtcctgacactagacggtctacatctggttactgtgtttttctaggtgacaaccttatttcttggtctt |
16594562 |
T |
|
| Q |
177 |
ccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctctt |
276 |
Q |
| |
|
||||| | ||||| || || || | || ||||| ||||||| ||| || || ||||| ||| | |||| ||||| |||||| |||||||||||||| | |
|
|
| T |
16594563 |
ccaaaaggcaacctactctctcccgttctagtgctgaagccgaatataggggagttgcaaatgttgtttccgaatcgtgttggattcgcaatcttctcct |
16594662 |
T |
|
| Q |
277 |
ggagcttcgctacccactttcccaggctactttggtgtattgtgataatgttaatgccatcta |
339 |
Q |
| |
|
|| || | | || || | |||| ||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
16594663 |
agaactccattttcctattcctgaggccactttggtgtattgtgacaatgttagtgccatcta |
16594725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 94 - 339
Target Start/End: Original strand, 31713 - 31958
Alignment:
| Q |
94 |
tgattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtcttccaaacgacaacccacg |
193 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||| || || || ||| | ||||| ||||||||||||| || |||||||||||| | || || || |
|
|
| T |
31713 |
tgattggggtggatgtcctgacaccagacgttctacatctgtatactgtgtttttctaggtgacaaccttatttcttggtcttccaaaaggcagccaact |
31812 |
T |
|
| Q |
194 |
ctttctcactccagtgcagaagccggatacagaggtgttgctaatatggtttttgaatcttgttggcttcgcaatcttctcttggagcttcgctacccac |
293 |
Q |
| |
|
|| || || || ||||| ||||| | ||| |||||||||| ||| | | | |||||| |||| | ||||||||||||| |||| || | | || |
|
|
| T |
31813 |
ctctcccattctagtgctgaagctgaatatcgaggtgttgcaaatgttatctctgaatcgtgttagattcgcaatcttcttctggaactccattttccta |
31912 |
T |
|
| Q |
294 |
tttcccaggctactttggtgtattgtgataatgttaatgccatcta |
339 |
Q |
| |
|
|| | ||||| ||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
31913 |
ttcctcaggcaactttggtgtattgtgacaatgttagtgccatcta |
31958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 1586600 - 1586475
Alignment:
| Q |
146 |
tttcttggtgacaaccttacatcatggtcttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaatatggttt |
245 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| | ||||| || || ||||| || ||||| ||||| | ||| ||||||||||||||| | || | |
|
|
| T |
1586600 |
tttcttggtgacaaccttatctcttggtcttccaaaaggcaacctactctctctcagtctagtgctgaagctgaatatagaggtgttgctaatgttgtat |
1586501 |
T |
|
| Q |
246 |
ttgaatcttgttggcttcgcaatctt |
271 |
Q |
| |
|
||| ||||||||| |||| |||||| |
|
|
| T |
1586500 |
atgagtcttgttggattcgtaatctt |
1586475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 238
Target Start/End: Complemental strand, 6123 - 5960
Alignment:
| Q |
75 |
ttatcttctatactgatggtgattggggtggatgtcctgacacctgtcattctacttccgtctattgtatgtttcttggtgacaaccttacatcatggtc |
174 |
Q |
| |
|
|||||| ||| ||||| | ||||||||||||||||| ||||||| | ||||| || | |||||| | ||||||||||||||||||| || ||||| |
|
|
| T |
6123 |
ttatctcctacactgacgttgattggggtggatgtcttgacaccagacattccacagctcggtattgtgtttttcttggtgacaaccttatctcttggtc |
6024 |
T |
|
| Q |
175 |
ttccaaacgacaacccacgctttctcactccagtgcagaagccggatacagaggtgttgctaat |
238 |
Q |
| |
|
||||||| | || ||||| || |||| || |||| ||||||| ||| ||||||||||||||| |
|
|
| T |
6023 |
ttccaaaaggcagcccactctctctcggtctagtgttgaagccgaatatagaggtgttgctaat |
5960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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