View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7024_high_2 (Length: 536)
Name: NF7024_high_2
Description: NF7024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7024_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 69 - 529
Target Start/End: Complemental strand, 589720 - 589262
Alignment:
| Q |
69 |
ctcacaagaacaagaatgattctctaaccctcaaagcaaaatttgcatgcctaaaattccaatacaaagcctttcataaaaataacatgttacaataaga |
168 |
Q |
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| T |
589720 |
ctcacaagaacaagaatgattctctaaccctcaaagcaaaatttgcatgcctaaaattccaacacaaagcctttcataaaaataacatgttacaataaga |
589621 |
T |
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| Q |
169 |
tatcaataagatcatagagaattttatcaaaaacatatatataagatcatacagaagcttagcacaaataaataacttacctgttttgcttatgcagaca |
268 |
Q |
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| T |
589620 |
tatcaataagatcatagagaattttatcaaaaacatatatataagatcatacagaagcttagcacaaatatataacttgcctgttttgcttatgcagaca |
589521 |
T |
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| Q |
269 |
acatgtatctctgaatttgagggtgatcgatcaacaagtagtagttttacttaactttcaagatatcaacaaaaatactatactatatactaaatacaaa |
368 |
Q |
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| T |
589520 |
acatgtatctctgaatttgagggtgatcgatcaagaagtagtagttttacttaactttcaagatatcaacaaaaatactatactatatactaaatacaaa |
589421 |
T |
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| Q |
369 |
atttccttgattccatttatgtggggtcgatattatcccataactataaattgatactattattttgc-ttctttgatgttaaagtaatttggactgtat |
467 |
Q |
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| T |
589420 |
atttccttgattccatttatgtggggtcgatattatcccataactataaattga---tattattttactttttttgatgttaaagtaatttggactgtat |
589324 |
T |
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| Q |
468 |
ttttgactatattatataattccttaaaccaaataaatatctatttctttgttgttcatctc |
529 |
Q |
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| T |
589323 |
ttttgactatattatataaatccttaaaccaaataaatatctatttctttgttgttcttctc |
589262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 589765 - 589737
Alignment:
| Q |
20 |
caactttcatgatttctcttaccaaaagc |
48 |
Q |
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| T |
589765 |
caactttcatgatttctcttaccaaaagc |
589737 |
T |
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